Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2274g00018 ATGCCTCAGTACCAAGAAGACCTAGTGGCAACACAAACAACAACGACCACAGCAACCATGAAGGATGCCAATGGTGCTAACGTTTTGGATCTGAAAACGTTGATTGAGGAGCTTGAGTCATCGATTGAGGTCCCTTCCGTTTTTATCTGCCCAATCTCGCTCGAGCCAATGCAAGACCCCGTCACCCTTTGCACGGGACAAACCTACGACCGTTCCAACATCCTCAAATGGTTCTCCCTCGGCCACAACACCTGCCCCACCACAATGCAAGACCTCTGGGACGATTCCGTCACGCCCAACACCACTCTCCACCACTTCATCCTCTCCTGGTTCTCGCAGAAGTACTTGGCCATGAAGAAGAAGCTCGAGGATGTTCAAGGCACCGCCTTGGAGCTCCTCGACACGCTCAAAAAGGTCAAGGGTCAAAACAGAGTTCGCGCCCTCAAACAGCTTCGCAAACTCGTCGATTCCCAACTCTCCACCAGGAAAACCGTCGAGGAAAACAACGGGCTTGCTTTGATTTCTTCCCTGTTGGGTCCTTTCACCTCGCACGCGGTTGGGTCGGAAGCGATTGGGATTCTTGTCAATTTGGATTTGGGTTCGGAGCTGAAGAGGAATCTCATGCAACCCGCGAAGGTTTCTTTGTTGGTGGACATCATGAACGAGGGAACCATCCAGACGAAGATGAATTGCGCCAAGTTGATTCAAATGTTGTTGGTGGAAGGTAACCCCTCGGAGACCGTTGTCTTATCAAGTTTGAGTCTTTTGGTCGGGGTTTTAAGGTTAGTGAGAGATAAAAAGCACCCAACAAGCGTTTTAACCGGACTCATATTACTAAAAATTGTGTGTTCGCGGGAATCGGTTAGAAGCACAATTGTAAGCATAGGAGCAGTGCCTCAGCTGATTCAGCTTTTGCCCACTTTGAACAACGAGTGTTTAGAGATAGCCCTCAACATTCTCGAAGTCTTGTCAACACTTCCTGAGGGAAGATTGGCTTTGAAAGAGTGTCCCAATATTATTCCCAGTGTGGTGAAGTTGTTGATGAGAGTCTCGGAAAGTTGCACACAATTCGCATTGTCGATTTTGTGGGCTATTTACAAGCTTGCCCCTGAAGAATGTGCTTCGAAAGCTGTTGAAGCAGGGTTGGCGGCGAAGCTACTTCTAGTGATTCAGAGTGGTTGCAACCCAGTACTAAAGCAGAAATCTGCGGAGTTTTTGAAAATGTGCAGTTTAGATTACTCTTCTAGCATCTTGATTTCTAAGTGTATGCTTACTGCCACAATACAATGA 1290 0.4775 MPQYQEDLVATQTTTTTATMKDANGANVLDLKTLIEELESSIEVPSVFICPISLEPMQDPVTLCTGQTYDRSNILKWFSLGHNTCPTTMQDLWDDSVTPNTTLHHFILSWFSQKYLAMKKKLEDVQGTALELLDTLKKVKGQNRVRALKQLRKLVDSQLSTRKTVEENNGLALISSLLGPFTSHAVGSEAIGILVNLDLGSELKRNLMQPAKVSLLVDIMNEGTIQTKMNCAKLIQMLLVEGNPSETVVLSSLSLLVGVLRLVRDKKHPTSVLTGLILLKIVCSRESVRSTIVSIGAVPQLIQLLPTLNNECLEIALNILEVLSTLPEGRLALKECPNIIPSVVKLLMRVSESCTQFALSILWAIYKLAPEECASKAVEAGLAAKLLLVIQSGCNPVLKQKSAEFLKMCSLDYSSSILISKCMLTATIQ 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2274g00018 429 SUPERFAMILY ARM repeat 122 409 IPR016024 -
Vium2274g00018 429 Gene3D - 273 426 IPR011989 -
Vium2274g00018 429 SUPERFAMILY RING/U-box 41 114 - -
Vium2274g00018 429 SMART Ubox_2 47 110 IPR003613 GO:0004842|GO:0016567
Vium2274g00018 429 ProSiteProfiles U-box domain profile. 43 117 IPR003613 GO:0004842|GO:0016567
Vium2274g00018 429 Pfam U-box domain 44 114 IPR003613 GO:0004842|GO:0016567
Vium2274g00018 429 CDD RING-Ubox_PUB 45 97 IPR045210 -
Vium2274g00018 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 126 IPR013083 -
Vium2274g00018 429 Gene3D - 129 272 IPR011989 -
Vium2274g00018 429 PANTHER WDSAM1 PROTEIN 41 415 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2274g00018 Vium-Chr2274 137966 139933 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2274g00018 29 429 U-box Gene Family AT3G49810 63.840 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2274g00018 - - gmx:100808281 728.013