Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2274g00008 ATGAATTTGAAGATGGATTCCGATAGAGCGAAGCTGTTCGTAGGGGGCATTTCTCGTGAAACCACCGAAGATGTTCTCAAATTCCACTTCGCCAAGTACGGTACCGTTTTGGACTCCACTATCTCCGTAGACCACAGCACCCGATGCCCTAGAGGTTTCGGCTTCGTCACCTTCTCTGACCTCTCCGCCGCCGATCAAGCCCTGCAAGACACGCATGTCATTCTCGGAAGAACGGTAGAAGTAAAGAAAGCAATTCCAAGGAGTGAACAGCAACACCAAAACCAGTTACACAATAGAGGCGGAGGTAACTATAGTAGTAGTTGTGACTGTAGCAGTGACACCAACGTTAGGACTAAAAAGATTTTCGTGGGGGGTTTACCTGCTGGAATATCTGAGGAGGAGTTTAAGCAATACTTTGAGAGGTTTGGTCGGATAACTGACGTTGTGGTGATGCAGGACAGTGTTACTCACCGGCCCAGGGGGTTTGGGTTCATCACCTTTGATTCCGAGGAATCGGTTCAAAGCGTTATGGTGAAGAGTTTTCATGACCTGAATGGTAGACAGGTGGAGGTCAAGAGGGCTGTTCCTAAAGAGGGGAACCATGGGTATGATGGTTTTAGTAAATTGAGAAGTAAGAGTGAAAGAGGAGTTCCTAAAAGTTTTCCTCCTTACAGTCCTAGGAATATGCTTCCGGGTCTTGCTCCTTTGCCGTGGTATGGTAGTGATGGAGTATATGCATATGGTTCTAATGCTTACGGTTGTTGGTACCCTATGGGTGGGTATGGGGGGAACGGATATGCGATTCCGTCTGAAGCTTCTAGGAACTTCTGGTACGGGCCAATGATGGCTGGTCCTCAGGCATGTCAGGTGCCTTATGCTAGTGCTATTCCAAACTTGGCGTGGGGTAGGATTGGAATAGTAGGTAGTGGTCTAGGATCTTGGGGGTATGGTGGCATTCTTGGGTCTGCAACAAATTTGAAATTTGATCAACCTTTTATTGGCAACGGATTTGTTCCAGGCAACACGACATTGCATCATGGTGTAAAGCAGAATGTTGTGGACTCTTCCAGTTTGAAAGGGAGCAATGGTGAAATATCTAGCTGA 1104 0.471 MNLKMDSDRAKLFVGGISRETTEDVLKFHFAKYGTVLDSTISVDHSTRCPRGFGFVTFSDLSAADQALQDTHVILGRTVEVKKAIPRSEQQHQNQLHNRGGGNYSSSCDCSSDTNVRTKKIFVGGLPAGISEEEFKQYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQSVMVKSFHDLNGRQVEVKRAVPKEGNHGYDGFSKLRSKSERGVPKSFPPYSPRNMLPGLAPLPWYGSDGVYAYGSNAYGCWYPMGGYGGNGYAIPSEASRNFWYGPMMAGPQACQVPYASAIPNLAWGRIGIVGSGLGSWGYGGILGSATNLKFDQPFIGNGFVPGNTTLHHGVKQNVVDSSSLKGSNGEISS 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2274g00008 367 SUPERFAMILY RNA-binding domain, RBD 6 106 IPR035979 GO:0003676
Vium2274g00008 367 Gene3D - 115 203 IPR012677 -
Vium2274g00008 367 MobiDBLite consensus disorder prediction 201 215 - -
Vium2274g00008 367 FunFam RNA-binding protein 1 115 205 - -
Vium2274g00008 367 MobiDBLite consensus disorder prediction 201 222 - -
Vium2274g00008 367 CDD RRM2_Hrp1p 120 197 - -
Vium2274g00008 367 MobiDBLite consensus disorder prediction 87 109 - -
Vium2274g00008 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 196 IPR000504 GO:0003723
Vium2274g00008 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Vium2274g00008 367 MobiDBLite consensus disorder prediction 88 109 - -
Vium2274g00008 367 SMART rrm1_1 11 82 IPR000504 GO:0003723
Vium2274g00008 367 SMART rrm1_1 120 192 IPR000504 GO:0003723
Vium2274g00008 367 Gene3D - 2 97 IPR012677 -
Vium2274g00008 367 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 298 - -
Vium2274g00008 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Vium2274g00008 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 187 IPR000504 GO:0003723
Vium2274g00008 367 SUPERFAMILY RNA-binding domain, RBD 115 204 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2274g00008 Vium-Chr2274 67731 69376 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2274g00008 12 269 Eukaryotic Initiation Factors Gene Family AT4G34110 25.940 7.90e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2274g00008 K14411 - gmx:100816822 614.764