Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2274g00007 ATGAAGGGCATGGACGAGAGTAACACCGATGATGGAAGCAATCATAACTGGTTGGGGTTCTCTCTCTCACCCCACATGAACATGGAGGTTACTTCAGCTGCCACTATTCCCAACCCCACTGTTCCGACAACGTTCTACATGTCCTCCCCTCACATTTCCAGCTCAGGAATCTGTTACGGTGTCGGGGGAAATGGTAACTTCCATTCTCCTCTTACCGTTATGCCTATCAAGTCAGATGGGTCACTTTGTATCTTGGAAGCTCTCAATAGATCACAATCGCAAGTGATGGCACCGAATTCTACGCCTAAATTGGAGGACTTTCTTGGTGGTGCAACTATGGGAACTCACGAATATGGGAGCCACGAGAGAGGGGCAAATGCAATGGCTCTGAGTCTAGACAGCATCTACTATAGCACCCAAAATGCTCAGGCACAACCCAACAGAGTCACTCTCTCAGAATCCTTCAGGCAACAGGGGCATATGAACGTCCAAACGCACCCTTATTACTCAGGACTTGGTTGCCACGGGATGTATCAAGCACAGATGGAGGATGAAGCAACGAAGGAAGCTCGCGCATCAGTTTGCAGCTCCCTAATGCCTCAAATGACAGAAGATAGTTTGAAAAACTGGATGGCTTCAAGGGAATATTCAACTCATCAGCAGGTTTTGGAGCAGGAAATGAACTGTGGAATGGGGAATGAAGGAAGTGGCATGTCTCTTGGAACTGTGGGGTGTGGCGAGTTACAGTCACTGAGTTTATCGATGAGTCCTGGTTCTCAGTCTAGTTGTGTCACTGCACCTTCTGGGCCTGATTCTGTGGCTGTGGATGCAAAGAAGAGAGGGCATGTAAAGTTGGGTCAAAAGCAACCAGTGCACAGGAAATCTATTGACACATTTGGGCAGAGAACCTCTCAGTATAGAGGTGTCACAAGGCATAGATGGACTGGTAGGTATGAAGCGCATTTGTGGGATAATAGTTGCAAGAAGGAAGGGCAGACTAGGAAAGGAAGACAAGTATATTTGGGGGGTTACGATATGGAAGAGAAAGCTGCAAGAGCCTATGATCTCGCGGCTCTTAAGTACTGGGGACCTTCCACGCATATAAATTTTTCGATTGAAAATTACCATGTTCAACTCGAAGAAATGAAGAGCATGAGCAGGCAGGAATACGTTGCACATTTACGAAGAAAAAGCAGTGGATTTTCAAGGGGTGCTTCAATATACCGAGGGGTCACAAGGCACCACCAACACGGAAGATGGCAAGCAAGGATAGGTAGAGTTGCTGGGAACAAGGACCTATACCTTGGGACATTCAGCACACAGGAGGAAGCAGCAGAAGCATACGATGTAGCCGCAATCAAATTTCGCGGCGCAAATGCAGTCACGAACTTTGACATTTCAAGATACGATGTGGAGAGAATCATGGCGAGTATTAATCTTCTCGCAGGTGAGCTAGCAAGGAGAAATAAAGATAATGATCCAAGAAACGAGGCGAGGGAGTGCACTATGAAAAACAATAACAAGAGTGTGATGACAAGTGAGAGCCAGGAGGAAATAGTCGAAGGTAGAAACAGCAATGAAAACAATCCAGAGTGGAAAATGGTTTTGTTTAATCAAGCTTCACAGCAGCAACAGTCAAATGGCAGTGAGGAAAAAATAATGAACTGCGGAAATTATAGAAACAGTGCATTCTCTGGGGCCCTACAAGATCTCATTGGGATTGATTCGGTGGAGGAGTGTAGCAAAATTGGGACTCATTTTTCAAACGCGTCCTCGCTGGTGACCAGTTTAAGCAGCTCAAGAGAGGCTAGTCCTGAGAAAACGGGTCCCTCGCTTCTGTTTCCAAAGCCCTCCATGGAAACAAAGTTATTGAACCCCATTAGTACTAGTGTTACATCTTGGTTACCCTCACCAACGGTTCAAATGAGACCACCTCCTGCTATTTCTTTGTCTCACTTGCCAGTTTTTGCTGCTTGGACTGATACTTAA 1989 0.4615 MKGMDESNTDDGSNHNWLGFSLSPHMNMEVTSAATIPNPTVPTTFYMSSPHISSSGICYGVGGNGNFHSPLTVMPIKSDGSLCILEALNRSQSQVMAPNSTPKLEDFLGGATMGTHEYGSHERGANAMALSLDSIYYSTQNAQAQPNRVTLSESFRQQGHMNVQTHPYYSGLGCHGMYQAQMEDEATKEARASVCSSLMPQMTEDSLKNWMASREYSTHQQVLEQEMNCGMGNEGSGMSLGTVGCGELQSLSLSMSPGSQSSCVTAPSGPDSVAVDAKKRGHVKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFSIENYHVQLEEMKSMSRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGANAVTNFDISRYDVERIMASINLLAGELARRNKDNDPRNEARECTMKNNNKSVMTSESQEEIVEGRNSNENNPEWKMVLFNQASQQQQSNGSEEKIMNCGNYRNSAFSGALQDLIGIDSVEECSKIGTHFSNASSLVTSLSSSREASPEKTGPSLLFPKPSMETKLLNPISTSVTSWLPSPTVQMRPPPAISLSHLPVFAAWTDT 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2274g00007 662 FunFam AP2-like ethylene-responsive transcription factor ANT 304 373 - -
Vium2274g00007 662 Gene3D AP2/ERF domain 304 373 IPR036955 GO:0003700|GO:0006355
Vium2274g00007 662 Gene3D AP2/ERF domain 407 467 IPR036955 GO:0003700|GO:0006355
Vium2274g00007 662 Pfam AP2 domain 305 363 IPR001471 GO:0003700|GO:0006355
Vium2274g00007 662 Pfam AP2 domain 407 457 IPR001471 GO:0003700|GO:0006355
Vium2274g00007 662 CDD AP2 304 370 IPR001471 GO:0003700|GO:0006355
Vium2274g00007 662 FunFam AP2-like ethylene-responsive transcription factor 406 467 - -
Vium2274g00007 662 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 96 542 - -
Vium2274g00007 662 SMART rav1_2 407 471 IPR001471 GO:0003700|GO:0006355
Vium2274g00007 662 SMART rav1_2 305 377 IPR001471 GO:0003700|GO:0006355
Vium2274g00007 662 PRINTS Ethylene responsive element binding protein signature 447 467 IPR001471 GO:0003700|GO:0006355
Vium2274g00007 662 PRINTS Ethylene responsive element binding protein signature 306 317 IPR001471 GO:0003700|GO:0006355
Vium2274g00007 662 ProSiteProfiles AP2/ERF domain profile. 407 465 IPR001471 GO:0003700|GO:0006355
Vium2274g00007 662 SUPERFAMILY DNA-binding domain 406 467 IPR016177 GO:0003677
Vium2274g00007 662 CDD AP2 406 467 IPR001471 GO:0003700|GO:0006355
Vium2274g00007 662 ProSiteProfiles AP2/ERF domain profile. 305 371 IPR001471 GO:0003700|GO:0006355
Vium2274g00007 662 SUPERFAMILY DNA-binding domain 304 373 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2274g00007 Vium-Chr2274 49372 53567 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2274g00007 10 491 AP2-EREBP Transcription Factor Family AT4G37750 51.076 1.52e-151 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vium2274g00007 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2274g00007 K09285 - gmx:100787223 1075.08