Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2273g00013 ATGGTTTCCAAAACCCACTCCCAACTCATTATTGTATTTCTGTTTCTTCTTTCTTCCCTAAACATTACTTCCACCTCGTACACACATGATGCAGTCAATTTTGACAAGTGGGTATCTCGAAATGTGAAAAAGTACGAGGAGAGAAAGAGCATTTTGAAAACCAAAGTGAAGGTGGCTGAGAGTAACAAAGCTATCATAACAGTAAGACAAGACGGTTCTGGTGATTTCAAAACCATTTCAGAAGCTCTCAATAGCATTCCACCACGTAACACTAGGAGAGTTATAGTGTCCATTTCTCCGGGTGTTTATAGAGAGAAGGTGATGATCCCAAGAACAAAGGTTTTTGTTACATTGTCAGGGAACGCAGGGAATCCTCCAACCATTACTGGAAATGATACAGCATCTGCCTCCGGAAGAAATGGCACTCCCTTAGGGACGTTCCAGAGTGCAACTGTTGCTGTGGATGCTAGCTACTTTGTGGCCATCAACATCAAATTTGAGAACAGTGCTCCACATGAGATTGGAAGGAGAGGAGAACAAGGCGTGGCGCTTAGGATCTCAGGAACCAAAGCTGCTTTTTACAATTGCAGTTTCAGTGGAGCTCAAGATACTCTCTATGATCATAAAGGCCTTCATTTCTTCAACAACTGCTATATTCAAGGTTCTGTCGATTTCATCTTCGGTTCTGCTAGGTCTCTTTACCAGAATTGCTATCTAAATTCCACAACTACGAAGGTGGCTTCCATCACTGCTCAAAAGCGTACAAATTCGTCACTGGAGAGTGGATTCTCCTTCAAAAACTGCACAGTAACCGGTAGTGGACATGTTTATCTAGGAAGAGCATGGGGCGATTATTCCAGAGTTGTTTTCTCTTACACCTACATGGACAACCTAGTACTCCCCAAAGGATGGAGTGATTGGGGTGACCAAAACCGTGATTCGAGGGTATATTATGGAGAATACATGTGTAGTGGGCCAGGAGCTAACTTGGCAGGAAGAGTGCCATGGGCACGAATGCTTACCGATGAAGAGGCCAAGCCATTTATTGGGACCCAATTCATTGAAGGGGACACTTGGCTCATTAACACGACCTGA 1095 0.4384 MVSKTHSQLIIVFLFLLSSLNITSTSYTHDAVNFDKWVSRNVKKYEERKSILKTKVKVAESNKAIITVRQDGSGDFKTISEALNSIPPRNTRRVIVSISPGVYREKVMIPRTKVFVTLSGNAGNPPTITGNDTASASGRNGTPLGTFQSATVAVDASYFVAINIKFENSAPHEIGRRGEQGVALRISGTKAAFYNCSFSGAQDTLYDHKGLHFFNNCYIQGSVDFIFGSARSLYQNCYLNSTTTKVASITAQKRTNSSLESGFSFKNCTVTGSGHVYLGRAWGDYSRVVFSYTYMDNLVLPKGWSDWGDQNRDSRVYYGEYMCSGPGANLAGRVPWARMLTDEEAKPFIGTQFIEGDTWLINTT 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2273g00013 364 Pfam Pectinesterase 66 357 IPR000070 GO:0030599|GO:0042545
Vium2273g00013 364 FunFam Pectinesterase 61 362 - -
Vium2273g00013 364 ProSitePatterns Pectinesterase signature 2. 219 228 IPR033131 -
Vium2273g00013 364 Gene3D - 59 364 IPR012334 -
Vium2273g00013 364 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 56 360 - -
Vium2273g00013 364 SUPERFAMILY Pectin lyase-like 63 360 IPR011050 -
Vium2273g00013 364 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2273g00013 Vium-Chr2273 168181 173129 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2273g00013 9 360 Carbohydrate Esterase AT5G47500 42.090 4.97e-96 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2273g00013 K01051 - cave:132172434 518.079