Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2273g00012 ATGACAAGCTTATCAGATAGTCAATTATCTGCTACATATGGAAGTGAAGAAGAATTCGCAATTAAGAAAGGATCATGGACTGAGGAAGAAGATTCTCTTCTGATCAACTATGTCAACCTCCACGGCGAAGGCCACTGGAATTCCCTCGCTCGCTCTGCTTGTCTAAAGCGAACGGGTAAAAGCTGCAGACTAAGATGGTTGAACTACTTGCGTCCAAATGTTCGACGTGGGAACATCACTCTTCAAGAACAGCTCTTGATTCTCGAACTCCATTCCCGCTGGGGCAACCGGTGGGCTAAAATAGCAGAACAGTTGCCTGGGAGAACAGATAATGAAATAAAGAACTATTGGAGGACGAGAGTGTTGAAGCAAGCCAAGCAACTCAAATGTGATGTGAACAGCAAGCAGTTTAGGGATGCTGTGCGTTTTGTTTGGATGCCACGCCTTATGGAGCGGATTCAGGCTTCTTCTGGGAATGTTTATTCTTCCTATGGACATGGTCAAACCACATTGTGCAACACTCAAACCCACGGTGAATCTAGTGGGGTCAATCCCATGATGTTTTCTGAAAGCTCAATGATTTCCTCGTACTCTTCAGGGGTTGATGTTCAGCCTCCTTCTCTCTCTGATGCGAGTACAACTTCATCTTGCAATTTAATGGGAGATGGTAGCTGTTCATCGGAAAGTGTTGAAAAGGGTTGGCAGCAGTGGGACTACTCTGATCTCCAAGCATTTGAACCGAACCATGGTTTTGGTGATGCAGACTTGTGGACCGATGAAAATATGTGGTTTTTGCAGCAGCATCTTGCTGATGATTTTTGA 822 0.4501 MTSLSDSQLSATYGSEEEFAIKKGSWTEEEDSLLINYVNLHGEGHWNSLARSACLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILELHSRWGNRWAKIAEQLPGRTDNEIKNYWRTRVLKQAKQLKCDVNSKQFRDAVRFVWMPRLMERIQASSGNVYSSYGHGQTTLCNTQTHGESSGVNPMMFSESSMISSYSSGVDVQPPSLSDASTTSSCNLMGDGSCSSESVEKGWQQWDYSDLQAFEPNHGFGDADLWTDENMWFLQQHLADDF 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2273g00012 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 74 IPR017930 -
Vium2273g00012 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 125 IPR017930 -
Vium2273g00012 273 SMART sant 22 72 IPR001005 -
Vium2273g00012 273 SMART sant 75 123 IPR001005 -
Vium2273g00012 273 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 20 198 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vium2273g00012 273 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Vium2273g00012 273 Gene3D - 16 75 - -
Vium2273g00012 273 FunFam MYB transcription factor 80 143 - -
Vium2273g00012 273 FunFam Myb transcription factor 23 75 - -
Vium2273g00012 273 SUPERFAMILY Homeodomain-like 21 117 IPR009057 -
Vium2273g00012 273 Gene3D - 80 121 - -
Vium2273g00012 273 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Vium2273g00012 273 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Vium2273g00012 273 Pfam Myb-like DNA-binding domain 76 119 IPR001005 -
Vium2273g00012 273 CDD SANT 25 70 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2273g00012 Vium-Chr2273 160895 162353 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2273g00012 16 272 MYB Transcription Factor Family AT2G47190 48.669 3.57e-76 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium2273g00012 Myb_DNA-binding 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2273g00012 K09422 - gmx:778040 404.831