Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2273g00011 ATGGATACTAACTGTGGGCCCCTATTAAATACACAACCCAAGATGCAGCATGGTGAAAACGAGATGTTAGGCCTCAGAAAAGGTCCATGGACGGTTGACGAGGACACCATTCTGGTCAATTACATCACCACCCATGGTGAAGGTCACTGGAATTCCGTCGCACGATGTGCAGGTTTAAGGAGGAGTGGGAAGAGTTGCAGATTAAGGTGGCTGAACTACTTGCGCCCCGATGTGCGGCGTGGAAACATCACACTCCAAGAACAAATACTAATTCTCGACCTTCACTCTCGCTGGGGCAACAGGTGGTCGAAGATTGCACAGCACCTGCCAGGAAGAACGGATAATGAAATAAAGAACTATTGGAGGACGAGAGTGATAAAACAGGCGAAGCAACTCAGGTGCGATGTCAACAGCAAAGAGTTCAGAGACACCTTGCGTTATGTGTGGATGCCGCGCTTACTGGAACGGCTTCAGCCCACATCGGAAATTCTCCAGCCTCAGATGAAACTGGACCCAGGCCCAACTGAAATTCAGGGCTTTCACGGTTTGGATTCGGTGACGGAGTGGAGTAAAGGGAGCCACCCCGCCGGTTCTTATTCGGACTCATCATCCGTGGAGCTCCAAGTTCATTCGAATTCAGACCACAGCGATTGTTCGGGTTCGGGTCTGGATCCGTGGGGGAGTTTGAATATGCAGATGTGGGAAGAAGGGAATGGTGGGGGTGAATCGTTGGAAAGTTTGTGGAATGAGCTCGAAATAAAATACAGTTCCCTTCCGTGA 780 0.5013 MDTNCGPLLNTQPKMQHGENEMLGLRKGPWTVDEDTILVNYITTHGEGHWNSVARCAGLRRSGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLRCDVNSKEFRDTLRYVWMPRLLERLQPTSEILQPQMKLDPGPTEIQGFHGLDSVTEWSKGSHPAGSYSDSSSVELQVHSNSDHSDCSGSGLDPWGSLNMQMWEEGNGGGESLESLWNELEIKYSSLP 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2273g00011 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Vium2273g00011 259 FunFam MYB transcription factor 84 147 - -
Vium2273g00011 259 SMART sant 26 76 IPR001005 -
Vium2273g00011 259 SMART sant 79 127 IPR001005 -
Vium2273g00011 259 CDD SANT 84 123 IPR001005 -
Vium2273g00011 259 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Vium2273g00011 259 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Vium2273g00011 259 Gene3D - 27 79 - -
Vium2273g00011 259 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Vium2273g00011 259 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Vium2273g00011 259 SUPERFAMILY Homeodomain-like 24 121 IPR009057 -
Vium2273g00011 259 Gene3D - 84 125 - -
Vium2273g00011 259 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 24 196 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vium2273g00011 259 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Vium2273g00011 259 FunFam Myb transcription factor 27 79 - -
Vium2273g00011 259 CDD SANT 29 74 IPR001005 -
Vium2273g00011 259 MobiDBLite consensus disorder prediction 191 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2273g00011 Vium-Chr2273 133366 134516 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2273g00011 3 163 MYB Transcription Factor Family AT1G48000 65.432 3.44e-77 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium2273g00011 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2273g00011 K09422 - gmx:778065 313.923