Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2273g00002 ATGGTGGCTGAAGCAGAGGTTGTGTGTCAACAGAACGTGGGTGTGTTGGATGTGAAGCATTTTCAAAACAAGGGTAGCGATGTCCCCGAGATCGGAGATGCAGATACTAATTTGCCTCCGAGTTTTGACAGAGTTCGTGTCACTGAGTTGGTCTCCGCCGAGTTACTCACTTCACAAGAAGATGCTAAGTCTGCAGACAGGATCTCGGATGCTGCTCTTGAATCTGCGGTTCTGCAGTTTATACCTTCCCTCCGTTCAGGTAGTTTTTCTGACATTGGGCCAAGGAGATACATGGAAGATGAACATATAAGGATAGATGATTTGTCATCTCATATGGGATCACCATACAACTTTCCCAAACCTAGTGCTTTTTATGGGGTGTTCGATGGCCATGGAGGACCTGAAGCTGCAGCTTATATAAGAAAAAACGTCATAAAGTTCTTCTTCGAAGATGTCAGTTTCCCACAGACTTCTGAAGTCAATAGTGTATTTCTGGAAGAGGTAGAGGATTCCCTCAGAAAGGCGTTTCTTTTGGCTGATTCAGCTTTGGCCGATGATTGCAGTGTGAATAGTTCATCAGGCACCACGGCCCTCACTGCTTTGATATTTGGAAGGCTTCTAATGGTGGCCAATGCTGGCGACTGCCGAGCAGTTCTGTGTCGCAAAGGAGAGGCCATTGACATGTCTCAAGATCACAGGCCTATTTATCCATCAGAACGGAGGCGTGTTGAAGAATTGGGTGGCTACATAGATGATGGTTATCTCAATGGGGTTTTATCAGTTACCCGAGCACTAGGGGACTGGGACATGAAGTTACCTAAGGGTGGTCCCTCACCTTTGATTGCAGAACCGGAGTTCCGGCAAGTTGTTCTAACAGAGGATGATGAATTCCTCATCATAGGATGCGATGGCATATGGGATGTCATGTCAAGTCAGCATGCAGTTAGCCTTGTTCGCAGAGGCCTGAGGAGGCACGACGATCCTGAAAAATGTGCCAGGGACCTGGTTATGGAGGCACTACGCCTGAACACATTTGATAATCTCACTGTGATCATTGTATGTTTTTCTTCCCTCGACCACATGGAGCCAGAGCCATCCCCTCCTCGCCAACGGAAATTGAGATGCTGTAGCCTCTCTGCAGAGGCTCTTTGTAGCTTGAGGAGCTTGTTGGAAGGCAGTGCTAGCAACTGA 1191 0.4752 MVAEAEVVCQQNVGVLDVKHFQNKGSDVPEIGDADTNLPPSFDRVRVTELVSAELLTSQEDAKSADRISDAALESAVLQFIPSLRSGSFSDIGPRRYMEDEHIRIDDLSSHMGSPYNFPKPSAFYGVFDGHGGPEAAAYIRKNVIKFFFEDVSFPQTSEVNSVFLEEVEDSLRKAFLLADSALADDCSVNSSSGTTALTALIFGRLLMVANAGDCRAVLCRKGEAIDMSQDHRPIYPSERRRVEELGGYIDDGYLNGVLSVTRALGDWDMKLPKGGPSPLIAEPEFRQVVLTEDDEFLIIGCDGIWDVMSSQHAVSLVRRGLRRHDDPEKCARDLVMEALRLNTFDNLTVIIVCFSSLDHMEPEPSPPRQRKLRCCSLSAEALCSLRSLLEGSASN 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2273g00002 396 ProSiteProfiles PPM-type phosphatase domain profile. 85 355 IPR001932 -
Vium2273g00002 396 Pfam Protein phosphatase 2C 95 347 IPR001932 -
Vium2273g00002 396 FunFam Probable protein phosphatase 2C 22 69 358 - -
Vium2273g00002 396 CDD PP2Cc 85 355 IPR001932 -
Vium2273g00002 396 SUPERFAMILY PP2C-like 79 357 IPR036457 -
Vium2273g00002 396 PANTHER PROTEIN PHOSPHATASE 2C 74 353 IPR015655 GO:0004722|GO:0006470
Vium2273g00002 396 ProSitePatterns PPM-type phosphatase domain signature. 124 132 IPR000222 GO:0043169
Vium2273g00002 396 Gene3D - 60 361 IPR036457 -
Vium2273g00002 396 SMART PP2C_4 75 353 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2273g00002 Vium-Chr2273 12821 15750 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2273g00002 98 392 PP2C-type Phosphatase Gene Family AT3G62260 71.959 2.01e-156 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Vium2273g00002 PP2C 6e-67 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2273g00002 K14803 - gmx:100819791 739.569