Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2265g00002 ATGTGGAGAGAGACAACATCGTTGGTGGTACTGCTACTTATTCTATTCCACCATATTTCTGCTACCAAACAACACCTTTGTCCCCCTTCTTCCTGTGGCAACATCCCCAACATCACTTATCCATTTCGATTACAAGGTGACCCAGACAATTGTGGTGACCAAAGTTATGAGCTTGGTTGTGAGAATAATGTTACGGTGTTGTATCTGAACTCTGCACAGTATCATGTGCAGGCAATCAACTACAACAACTACACAGTGAGAGTGGTTGATCCTGCACTCCAACTCCATAACTGCTCCTCCCTTCCTCTACGTTCTCTCTCTCGCTCCAATTTCTCTGATACTTACTCTCATACTTACACTTACTCCACGCATCAATACCAAGCCCGTCTAGATCCGCATCGTAATTGGGCATCTCTGAGTTTCGAGCATATAGTGTTTTTGAACTGTAACCATTCAGTGAGAGAAAATGAGAAGTATGTGGAGAGTGGTGAGTGCGTGAAGTGGGACTCAAAAGGCTATGCATATGCTGTTGTTGGTGACCTAAAAGCTGAGGACTTAGAAGTTGGGTGTGACGTGAAGCTTGTTGCTCCCACATCGTTCAGGACTTTCAATAACCATTCCTACGCTGCCATGCACAGGGCTCTCGCCTATGGATTTGAGATCTCTTGGGTTAAAGTCGCCTGTCAGAATCATTGTATTGAAAAGTTTTGCTATTTCGACTCTTCACGCCAGAAGCTTCTTTGTCCATTAGGTGCGTTATATATTAACTTTCTCTACTTTTCAGGTTGTTCACGTTATTGGCTGACGTGGCTAGGACCAGAGTTGACTAAGGATGGTCGCGCCAATGAGGGCTTGACATATGGCAACCCCTTTCTTCACCTAAAAGTTAGGGTTTCAGATTTGCATCTCCAGATTGGGGAAAAACTTGCTCTAGTGCCGTCATGCGAGAATAGGGTTTCTCCTTCACGATGGATATGGTGCGGAGGAGAAGCTTGCGGAGAGGCGCTGGTGGGACGGTTGAAGATGATTGCGTTATTTGGCTTTGCGTTTCTGCGATTTGGGTTTTGCTCGCGAGAGGTTGATGGTGGCAGGTGGAGAATGAAGAAGCTTCACGACAACGTTGCTCAAAGGCGCGAGGAACTCGCTATTCAGTTTCGCGATGTTTGTAGCGGAGTGTTTAGAACAACGGCACAACCATTTGGTTTTGTCATTCTGCAATTGGCGGTTAACAAAATTTTGTTTGGATTGCCATTCTTAATTGTGATTTTAATATGTAAATGGAGGAAAAGACATGCATCAATATATGAAAATATTGAAAATTATCTTGAACAAAATCACTTAGCACCTATCAGATACTCATATAAGGAAATTAAGAAGATGACAGGAAGTTTCAAACAGAAGTTAGGTGAAGGAGGATTTGGCTCTGTGTTTAAGGCAAAGTTGCGAAGCGGACCTTCCGTGGCAGTCAAAATGTTAGGCAAATCTAAAGGAAATGGACAAGATTTTATCAATGAAGTTGCAACTATTGGAAGAATACATCATCAAAACGTGGTACAATTAATTGGATTTTGTGTCAGTGGTTCAAAGCGGACTCTTGTTTATGAATTCATGCCCAATGGATCTCTAGATAAATTTATATTTTCAAGAAATGGAAATATAGAATTTAGCTATGAAAAAATATATAAGATATCGATTGGAGTAGCTCGTGGAATTGCTTATCTCCATCATGGGTGTGAGATGCAGATTTTGCATTTTGATATCAAACCCCATAACATCCTATTGGATGAAAACTTCATCCCAAAGATTTCTGACTTTGGATTAGCAAAGTTATATCCAATAGATAATAGCTTCATCACAATGACAGCAGCAAGAGGAACCATTGGATATATGGCTCCAGAATTGTTTTACAATAATATTGGGGGAATATCTCACAAAGCTGATGTTTATAGTTTCGGAATGATGTTGATGGAGATGGCAAGCAAGAGGAAAAATCTAAATCCCAATGCAGAATATTCAAGTCAACTTTATTTTCCCCTTTGGATATATGATCATATTAGAGATGAGGAAGATATAGATATAAAGGATTTGATGGAAGAGGAAAAGCTAATAGTAAAGAAAATGATCATAATTGCACTTTGGTGTATACAGTTAAGACCAAAGGATCGTCCATCAATGAATAGAGTAGTGAAAATGCTTGAAGGAGACATTGAAGATTTAGAAATACCTCCAAAACCTACTTTATTTCCTGATGAAATGAGTTTAGAGAATCAAACCGCCAGTTCTATCTAA 2289 0.4015 MWRETTSLVVLLLILFHHISATKQHLCPPSSCGNIPNITYPFRLQGDPDNCGDQSYELGCENNVTVLYLNSAQYHVQAINYNNYTVRVVDPALQLHNCSSLPLRSLSRSNFSDTYSHTYTYSTHQYQARLDPHRNWASLSFEHIVFLNCNHSVRENEKYVESGECVKWDSKGYAYAVVGDLKAEDLEVGCDVKLVAPTSFRTFNNHSYAAMHRALAYGFEISWVKVACQNHCIEKFCYFDSSRQKLLCPLGALYINFLYFSGCSRYWLTWLGPELTKDGRANEGLTYGNPFLHLKVRVSDLHLQIGEKLALVPSCENRVSPSRWIWCGGEACGEALVGRLKMIALFGFAFLRFGFCSREVDGGRWRMKKLHDNVAQRREELAIQFRDVCSGVFRTTAQPFGFVILQLAVNKILFGLPFLIVILICKWRKRHASIYENIENYLEQNHLAPIRYSYKEIKKMTGSFKQKLGEGGFGSVFKAKLRSGPSVAVKMLGKSKGNGQDFINEVATIGRIHHQNVVQLIGFCVSGSKRTLVYEFMPNGSLDKFIFSRNGNIEFSYEKIYKISIGVARGIAYLHHGCEMQILHFDIKPHNILLDENFIPKISDFGLAKLYPIDNSFITMTAARGTIGYMAPELFYNNIGGISHKADVYSFGMMLMEMASKRKNLNPNAEYSSQLYFPLWIYDHIRDEEDIDIKDLMEEEKLIVKKMIIIALWCIQLRPKDRPSMNRVVKMLEGDIEDLEIPPKPTLFPDEMSLENQTASSI 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2265g00002 762 Gene3D Transferase(Phosphotransferase) domain 1 537 740 - -
Vium2265g00002 762 Pfam Wall-associated receptor kinase galacturonan-binding 27 90 IPR025287 GO:0030247
Vium2265g00002 762 PANTHER RUST RESISTANCE KINASE LR10-RELATED 435 753 IPR045874 GO:0004672
Vium2265g00002 762 ProSitePatterns Protein kinases ATP-binding region signature. 468 490 IPR017441 GO:0005524
Vium2265g00002 762 ProSitePatterns Serine/Threonine protein kinases active-site signature. 582 594 IPR008271 GO:0004672|GO:0006468
Vium2265g00002 762 SUPERFAMILY Protein kinase-like (PK-like) 447 733 IPR011009 -
Vium2265g00002 762 Gene3D Phosphorylase Kinase; domain 1 436 536 - -
Vium2265g00002 762 FunFam PR5-like receptor kinase 537 744 - -
Vium2265g00002 762 ProSiteProfiles Protein kinase domain profile. 462 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2265g00002 762 SMART serkin_6 462 732 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2265g00002 762 FunFam serine/threonine-protein kinase PBS1-like 431 536 - -
Vium2265g00002 762 Pfam Protein kinase domain 465 730 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2265g00002 Vium-Chr2265 48753 55830 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2265g00002 420 747 Receptor kinase-like Gene Family AT4G18250 48.529 3.88e-105 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium2265g00002 Pkinase 9.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2265g00002 - - vum:124829708 1543.1