Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2265g00001 ATGGTGGTTGTCTTCCTTCTTCCTGTGGCAACATCACCAACATCACTTATCCATTTCGATTTAAAGGCGACCCAGAGAAGTGCGGCCATCAACTACAACAACTACACCGTCAGAGTGGTTGACCCTACAATTCAACACCACAACTGCTCCTCCCTTCCTCTCCGTTCTCTCTCTCGCTCCAATTTCTCTGATACTTACACTTACCCCACGGATCTATACCAAGTTGGTTTAAGAGATTATCGTAATTGGGAATCTCTGAGTTTCGAGCATATAGTGTTTTTGAATTGTAACCATTCAGTGAGAGAGAATGAGAAGTATGTGGAGACTGGAGAGTGCGTGAAGTGGGATTCCAAGGGCTATGCATATGCAGTTGGTGGTGACCTAAAAGCTGAGGACTTTGAAGTTGGGTGTGACGTAAAGCTTGTTGCTCCAACATCTTTGAGAACTTTGAATAACCATTCCTACAATTCCATGCACAGGGGATTGGCCTATGGATTTGAGATTTCATGGCTGAAACTCGCCTGTCATAAACATTGTCCACTCTCACAAAGCAGTTGCTATTTCGACTATTCTAGCCAGAAGTTCAAATGCTTTGGTATACTGGAAGAGCTGACACTCCAGGCATCAAGAATTTCCCTACTTATCATCATGGCATGGGCTTGCAAAATTGTGTTTGGGGTGCCACTGATTGTTGCACTTGTGATATGTAAATGGAGGAAAAGACGTGCATCAATGTTTGAAAATATTGAAAATTACCTTGAACACAATCAGTTAGCACCTATCAGATACTCATACAAGGAAATTAAGAAGATGACGAAAAGTTTCAAAGAGAAGTTAGGTGAAGGAGGATTTGGCTCTGTGTTTAAGGGAAAGTTGCGCAGTGGATCTTCTGTGGCAATCAAAATGTTATCCAGATCCAAAGGAAATGGACAAGATTTTATCAATGAAGTTGGAACCATTGGAAGAATACATCATCAAAATGTGGTACAGTTAATTGGATTTTGTGTTAGTGGCTCAAAGCGCGCTCTTGTGTATGAATTGATGTCCAATGGTTCTCTTGATAAACTTATATTTTCAAAAGAAGGAAGTGCACAATTAAGCTATGAAAAGATATACAATATATCAGTTGGAGTGGCTCGTGGGATTTCTTATCTTCATCATGGATGTGAGATGAAGATTTTGCATTTTGATATCAAACCACATAACATCTTACTAGATGAAAACTTTATCCCAAAGATTTCCGACTTTGGATTGGCAAAGTTATATCCAGTAGAAAACAGCATTGTCTCAGTGACTGCAGCAAGAGGAACCATTGGATATATGGCTCCAGAATTGTTCTACAATAATGTTGGAGGAATTTCTCATAAGGCTGATGTTTATAGTTTTGGAATGCTTTTGATGGAGATGGCAAGCAAGAGGAAGAACCTAAATCCTCATGCGGATAGATCAAGTCAAATTTACTTTCCATTTTGGATCTATGATCGTATTAGAGAAGAGGAAGATATAGATATACAAGATTTGACTGAAGAGGAAAAGAAAATAACAAAGAAGATGATCATAGTTGCACTTTGGTGTATACAATTGAAACCAAATAATCGTCCCTCAATGAATAGAGTGGTAAAAATGCTTGAAGGAAATATTGAAGACCTCGAAATACCTCCAAAATCTACTTTATATCCTGATGAAATGAATATAGATGATCAAACAATAAACTCAAAGTCCACAGACTTCGACACATTCTCTTAA 1746 0.386 MVVVFLLPVATSPTSLIHFDLKATQRSAAINYNNYTVRVVDPTIQHHNCSSLPLRSLSRSNFSDTYTYPTDLYQVGLRDYRNWESLSFEHIVFLNCNHSVRENEKYVETGECVKWDSKGYAYAVGGDLKAEDFEVGCDVKLVAPTSLRTLNNHSYNSMHRGLAYGFEISWLKLACHKHCPLSQSSCYFDYSSQKFKCFGILEELTLQASRISLLIIMAWACKIVFGVPLIVALVICKWRKRRASMFENIENYLEHNQLAPIRYSYKEIKKMTKSFKEKLGEGGFGSVFKGKLRSGSSVAIKMLSRSKGNGQDFINEVGTIGRIHHQNVVQLIGFCVSGSKRALVYELMSNGSLDKLIFSKEGSAQLSYEKIYNISVGVARGISYLHHGCEMKILHFDIKPHNILLDENFIPKISDFGLAKLYPVENSIVSVTAARGTIGYMAPELFYNNVGGISHKADVYSFGMLLMEMASKRKNLNPHADRSSQIYFPFWIYDRIREEEDIDIQDLTEEEKKITKKMIIVALWCIQLKPNNRPSMNRVVKMLEGNIEDLEIPPKSTLYPDEMNIDDQTINSKSTDFDTFS 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2265g00001 581 Gene3D Transferase(Phosphotransferase) domain 1 348 555 - -
Vium2265g00001 581 ProSiteProfiles Protein kinase domain profile. 273 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2265g00001 581 PANTHER RUST RESISTANCE KINASE LR10-RELATED 244 563 IPR045874 GO:0004672
Vium2265g00001 581 SUPERFAMILY Protein kinase-like (PK-like) 258 544 IPR011009 -
Vium2265g00001 581 ProSitePatterns Serine/Threonine protein kinases active-site signature. 393 405 IPR008271 GO:0004672|GO:0006468
Vium2265g00001 581 Pfam Protein kinase domain 276 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2265g00001 581 FunFam serine/threonine-protein kinase PBS1-like 241 347 - -
Vium2265g00001 581 SMART serkin_6 273 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2265g00001 581 Gene3D Phosphorylase Kinase; domain 1 247 347 - -
Vium2265g00001 581 ProSitePatterns Protein kinases ATP-binding region signature. 279 301 IPR017441 GO:0005524
Vium2265g00001 581 Coils Coil 497 517 - -
Vium2265g00001 581 FunFam PR5-like receptor kinase 348 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2265g00001 Vium-Chr2265 21512 33314 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2265g00001 149 559 Receptor kinase-like Gene Family AT5G38260 43.943 1.27e-111 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium2265g00001 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2265g00001 - - gmx:100782182 749.969