Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2263g00012 ATGTCTCTTCTCAGCCGATTCTTCTACAAGCGTCCCCCTGATGGCTTACTCGAATTTGCAGACAGAGTCTATGTATTCGATTCCTGCTTCTCCACCGAAGCCCTCCCAGAGGGAATGTACCAGCTCTACCTCCGCCAAATTCTCTCCGACCTCCACGAAGACTTCCCGGAATCTTCCTTCCTCGCACTCAACTTCCGCGACGGTGACTCACGCAGCCGCTTCTCGCGCCTCCTGTGCGAACTTGACGCCACCGTCATCGACTATCCGAAGCAGTACGAGGGCTGCCCCCTCCTCCCCCTCTCCCTCCTCCACCACTTCCTCCGCCTCTGTGACACCTGCCTCACCGACCCCGCCGCCGTGATCTTGTTCCACTGTGAGCGCGGCGGCTGGCCCCTCCTCGCCTTTCTCCTTGCTGCTTTCCTCGTTTTCCGGAAGGCGCAGAGTGGGGAGCGGAAGATTCTGGAGATGGTTCACAGGGAGGCGCCGAAGGGGCTGCTGCAGCTGCTGTCGGCGCTCAACCCGATGCCGTCGCAGCTGCGTTATGTGCAGTATGTGGCTCGGAGGAACATTGGCGCGGAGTGGCCGCCGCCGGAGAGGGCGCTGTCTCTGGACTGTGTAATACTCAGAGGGGTTCCTGGGTTTGATGGGGGGAATGGGTGCAGGCCGTTGTTTAGGATTTTTGGGAGGAATTTGCTTAGTAAAGGCGGCCTTTCCACGCGGATGATTTATAATATGCATAAGAAGAAGAAGACTTTGAGGCACTACAGACAGGCAGACTGTGATGTGATTAAGATTGATATTCAATGCTTAGTGCAAGGGGATGTGGTGTTGGAGTGCGTGCATTTGGATTTGGATCCGGAGAGGGAGGTGATGATGTTTCGAGTGATGTTCAATACAGCATTCATTCGGTCAAACATTTTGATGCTGAATGCTGAGAACTTGGACATTCTGTGGGATTCGAAGGAGCGGTATCCAAAGGGCTTCCGGGCTGAGGTATTGTTTGGGGAGGTTGAAAACATAAGTCCTCAAAGGGCTCCCACAAGTATTTTAGATGGTGAGGTGAAAGGTGGATTACCCATTGAGGCATTTTCAAGGGTTCAAGAACTTTTCAGTGGTGCAGAATGGATTGACAGTGGTGATTCTGCTGCTGTATGGCTTCTTAAGCAGCTTACAGTCTTAAACGACGCCAAAGAGTTTTCAAGGTTTCAGGGTAGAGGAAGTTGGTATTCATCTCCTGCTGACTCTGAAGAAGAAAATAATGAGTCGAGCACTGCTGATAGTTCAGACGAGGCCTTTGATGTTATTCCCAGGTCTTATGCTGATCCTTCAAAATTATTTACATCTGACACACCTGATTTGGTCCATTTAACTTTTGAAAACAACGGTGGAGATTATGTAAATCTAACTTCAAGAACACCTGATCAGTCACTAACCGATGATGTTTCATTGCCACACCATGCTCTAACTAAGGAAACTTCTCCTTGTTTGTCTCCACCGTCACCTTCACATTTTCCCGCTATTCAACCTCTACCGACACTTCCACCTCAATCATCAATACCTATACAGCCAAGTTTAGCTCCTCCCCATCCTCCCCCACCTCCCCCACCTCCGCATCCATTAGTTCAGGATCTGAACAATGCTTCTACATTGCCTTCACCTCCTCCTCCACCCCCTCTCCCTCCTATAGGTGGGGATGCCAATAGCACTCCTGGTTTACCTCCATCTGTACAAACAAGTTCAGCCCCTCCACCACCTCCTCCTCCCCCACTTGCACTTGGACCTGTACAAACAACTTTAGTCCCACCACCTCCTCCTCCTCCACCACCAGGTACTGAGGGAACAAATTCAGTCCCACCACCTCCGCCTCCACCTCCACCTTCAGGTCCTTTGCGAACAGATTTGGCGCCTCCACCTCCACCACCTCCTCCTCCTCCTCCTCCTTTAGGTCCTATGCAAACAGGTTCAGCCCCACCACCACCACCACCACCACCTCCACCTCCACCTCCTTTAGGATCTGAACAAACAGGTTCAGCTCCACCACCACCACCTCCCCCTCCTCTAGGTCCTGCACAAACAAGTTCAGTTCCACCTCCACCTCCACCTCCACCTCTTTCAGGTCCTACACAATTAGGTTCTTTACCCCCACCACCTCCAGGTCTTGTACAAACAGGTTCTGCTCCACCTCCACCTCCACCTCCTCCTCCTCCAGGTCATGTGCAAACAGGTTCAGCTCCACCTCCACCTCCACCTCCTCCAGGTCCTGTACGAACAGGTTCAGCTCCACCACCACCTCCACCTCCCCCAGGTGCTGTACAAACAGGTTCAGCCCCACCACCACCACCTCCTCCTCCAGGTCCTGTACGAACAGGTTCAACTCCACCACCTCCTCCTCCTCCAGGTCCTGTACGAGCAGGTGCAGGTCCACCACCACCTCCACCTCCTCCAGGTCCTGTACGAACAGGTTCAGCCCCTCCACCACCTCCTCCTCCAGGTCCTATACGAGCAGGTTCAGCTCCATCACCACCACCTCCGCCAAGTGTACAAACAGGTTCAGCTCCACCACCACCACCACCATTGGCACCAAGGCCCCCAGGTGCTCCTCCTCCTCCTCCACCTGGTCGTGGTGCATCTCCAATGCCACCTGCACTTACAGCCACTAGTGTGGCACCACCTCCTGGCAAAGCTTCAACAACAAATGTTGGTAGAGGTCGTGGTACTGGTGTTACTGCCAATGCTCCAAAGAAAACTTTGCTGAAACCCCTACACTGGGTGAAAGTCGCTCGAGCAGCCAAGGGAAGTCTATGGGCTGATTCACAGAAACAGGACAGTGGGACAAGGGCCCCTGAGATAGATATATCAGAACTTGAGACCCTGTTTTCAGCAGCATCTACTTCTGATGGGAGTAGTACTAGAGGAGGAGTTCGGCGTGGTCCTAATATTAACAAGCCGGAGAAAGTACAACTGGTTGACTTGCGTAGAGCATATAATTGTGAAATAATGCTCTCTAAAATCAAAATTCCTTTGCCAGATATGCTTAAAGCTGTACTGGCATTGGATTCTTTGGTTCTTGATATTGATCAGGTTGAGAATCTCATCAAGTTCTGTCCAACAAAGGAAGAGATGGAAATGTTAAAGAATTATGCAGGAAACAAGGAAATGCTTGGAAAGTGTGAACAGTTTTTTATGGAGCTGATGAAGGTTCCGCGTGTGGAATCCAAATTAAGGGTTTTTGCTTTTAAAATCACCTTTTCTTCTCAGGTGAACGATTTGAAGGTAAATTTGAACACAATCAACAATGCAGCCAGAGAGGTGAAAGAATCTGGGAAATTGCGTCAAATAATGCAGACTATTCTTACTCTGGGAAATGCCTTGAATCAAGGAACAGCACGGGGATCAGCTGTTGGATTCAAATTGGATAGCCTTCTTAAATTATCTGACACTCGTGCAAGAAATAATAAAATGACTTTAATGCATTATTTGTGTAAGCTTCTTGCTGAGAAAATGCCAGAACTGCTAGATTTTGATAAGGATCTTGTCCATTTGGAAGCAGCTTCTAAGATTCAACTAAAAGCATTGGCCGAGGAAATGCAAGCTGTGAGTAAAGGTTTAGAGAAAGTTGAGCAAGAACTCGCTGCTTCTGAAAATGATGGTGCCATATCAACAGGATTTCGTAAGGTGTTGAAGAATTTTCTTGATATTGCTGAAGCTGATGTGAGGTCCCTTATATCATTGTATTCTGAAGTGGGAAGAAGTGCAGACTCTTTGTCCCAATACTTTGGAGAGGATCCAGCTAGATGTCCCTTTGAACAAGTGACACAAATCCTTGTTGTCTTTGTCAAGATGTTCAACAAGTCAAGGGAGGAGAATGAAAGGCAAGCAGATGCTGAAAAGAAGAAATTAGAGAAAGAAGCCTTGAAGGAAAAGGCCGCAAATAATTCACATTCCAAAAGAGACGTGATTCGGTAG 3966 0.4942 MSLLSRFFYKRPPDGLLEFADRVYVFDSCFSTEALPEGMYQLYLRQILSDLHEDFPESSFLALNFRDGDSRSRFSRLLCELDATVIDYPKQYEGCPLLPLSLLHHFLRLCDTCLTDPAAVILFHCERGGWPLLAFLLAAFLVFRKAQSGERKILEMVHREAPKGLLQLLSALNPMPSQLRYVQYVARRNIGAEWPPPERALSLDCVILRGVPGFDGGNGCRPLFRIFGRNLLSKGGLSTRMIYNMHKKKKTLRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFNTAFIRSNILMLNAENLDILWDSKERYPKGFRAEVLFGEVENISPQRAPTSILDGEVKGGLPIEAFSRVQELFSGAEWIDSGDSAAVWLLKQLTVLNDAKEFSRFQGRGSWYSSPADSEEENNESSTADSSDEAFDVIPRSYADPSKLFTSDTPDLVHLTFENNGGDYVNLTSRTPDQSLTDDVSLPHHALTKETSPCLSPPSPSHFPAIQPLPTLPPQSSIPIQPSLAPPHPPPPPPPPHPLVQDLNNASTLPSPPPPPPLPPIGGDANSTPGLPPSVQTSSAPPPPPPPPLALGPVQTTLVPPPPPPPPPGTEGTNSVPPPPPPPPPSGPLRTDLAPPPPPPPPPPPPLGPMQTGSAPPPPPPPPPPPPPLGSEQTGSAPPPPPPPPLGPAQTSSVPPPPPPPPLSGPTQLGSLPPPPPGLVQTGSAPPPPPPPPPPGHVQTGSAPPPPPPPPGPVRTGSAPPPPPPPPGAVQTGSAPPPPPPPPGPVRTGSTPPPPPPPGPVRAGAGPPPPPPPPGPVRTGSAPPPPPPPGPIRAGSAPSPPPPPSVQTGSAPPPPPPLAPRPPGAPPPPPPGRGASPMPPALTATSVAPPPGKASTTNVGRGRGTGVTANAPKKTLLKPLHWVKVARAAKGSLWADSQKQDSGTRAPEIDISELETLFSAASTSDGSSTRGGVRRGPNINKPEKVQLVDLRRAYNCEIMLSKIKIPLPDMLKAVLALDSLVLDIDQVENLIKFCPTKEEMEMLKNYAGNKEMLGKCEQFFMELMKVPRVESKLRVFAFKITFSSQVNDLKVNLNTINNAAREVKESGKLRQIMQTILTLGNALNQGTARGSAVGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKMPELLDFDKDLVHLEAASKIQLKALAEEMQAVSKGLEKVEQELAASENDGAISTGFRKVLKNFLDIAEADVRSLISLYSEVGRSADSLSQYFGEDPARCPFEQVTQILVVFVKMFNKSREENERQADAEKKKLEKEALKEKAANNSHSKRDVIR 1321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2263g00012 1321 SMART PTEN_C2_2 196 1020 IPR014020 -
Vium2263g00012 1321 PANTHER FORMIN-J 824 1314 - -
Vium2263g00012 1321 ProSiteProfiles C2 tensin-type domain profile. 198 337 IPR014020 -
Vium2263g00012 1321 Coils Coil 1189 1216 - -
Vium2263g00012 1321 MobiDBLite consensus disorder prediction 549 564 - -
Vium2263g00012 1321 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 198 337 IPR035892 -
Vium2263g00012 1321 Pfam Formin Homology 2 Domain 913 1283 IPR015425 -
Vium2263g00012 1321 MobiDBLite consensus disorder prediction 1287 1321 - -
Vium2263g00012 1321 FunFam Formin-like protein 907 1294 - -
Vium2263g00012 1321 MobiDBLite consensus disorder prediction 961 981 - -
Vium2263g00012 1321 Coils Coil 1283 1310 - -
Vium2263g00012 1321 Gene3D Protein tyrosine phosphatase superfamily 15 189 IPR029021 -
Vium2263g00012 1321 Pfam C2 domain of PTEN tumour-suppressor protein 197 335 IPR014020 -
Vium2263g00012 1321 Coils Coil 1087 1107 - -
Vium2263g00012 1321 MobiDBLite consensus disorder prediction 576 878 - -
Vium2263g00012 1321 MobiDBLite consensus disorder prediction 498 541 - -
Vium2263g00012 1321 SMART it6_source 530 1321 IPR015425 -
Vium2263g00012 1321 Gene3D - 195 340 - -
Vium2263g00012 1321 MobiDBLite consensus disorder prediction 961 975 - -
Vium2263g00012 1321 SUPERFAMILY Formin homology 2 domain (FH2 domain) 853 1302 - -
Vium2263g00012 1321 Gene3D Formin, FH2 domain 908 1294 IPR042201 -
Vium2263g00012 1321 ProSiteProfiles Formin homology-2 (FH2) domain profile. 908 1308 IPR015425 -
Vium2263g00012 1321 MobiDBLite consensus disorder prediction 890 905 - -
Vium2263g00012 1321 MobiDBLite consensus disorder prediction 462 479 - -
Vium2263g00012 1321 MobiDBLite consensus disorder prediction 460 914 - -
Vium2263g00012 1321 MobiDBLite consensus disorder prediction 407 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2263g00012 Vium-Chr2263 109699 119851 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2263g00012 1 469 FH2 protein (formin) Gene Family AT1G31810 69.427 0.0 724