Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2263g00004 ATGGCTAGATCTAAACGACGACGTTCGGGCATTGTTGCCAGCCATATCAGACCGAAAATGATTTTTCAGCCTATTCTGGAGGATGGAGTGTTTCGTTTTGATTGTTCTGTAAAGGATAGAGAAGCAGCATCTCCTAGTATATCTTTTGTGAACGGCAAGGACAGAGACACACCTATCTCTACTGAGAAGGTTCCTCTGTATAACCCTACGTTTGAGATACGACTAGAGCAGCAGATTGTAAAACTTGAGCTGCCTGTAGGTTCCTCCCTTTATGGAACTGGAGAAGTTAGCGGACAGCTTGAGAGGACGGGCCAAAGAGTTTTCACATGGAACACTGATGCATGGGGTTATGGACCTGGAAATACATCCTTGTACCAATCACATCCGTGGGTGTTAGCTGTTCTTCCAAGTGGTGAGGGACTAGGAATCCTTGCTGACACTACAAGGCGCTGTGAGATTGATCTGAGGAAAGAATCAACAATACAGTTTGTTTCTCCATCTTCATATCCTGTCGTTACATTTGGTCCTTTTGCTTCACCCACTGCAGTGCTAAGTTCTCTATCGAAAGCAATTGGAACTGTATTTATGCCCCCGAAATGGTCTTTAGGCTATCATCAGTGCCATTCGAGTTATTTATCTGATCAGAGAGTTCTGGAGGTTGCAAAAACGTTTCAGAAGAAGTGCATACCATGTGACGTGATATGGATGGATACCGATTACATGGATGGTCTTCGTGTTTTCACATTTGACAAGAAGCGTTTCGAAGACCCCATGTCATTGGTGAAAGATCTCCGAAGTAGTGGTTGTAAAGTCATTTGGATGCTTGATCCTGGAATTAAGCTGGAAGAGGGTTATTTTGTATATGACAGTGGTTCTAAATGTGATGTTTGGATCCAAAATGAAGATCAAACTCCTTTCATAGGGGAGGTGTGGCCTGGCCCTTGTGTCTTCCCCGACTATACTCAGTCAAAAGTTCGTGCATGGTGGGCAAATTTAGTCAAAGATTTCATTTCCAATGGTGTTGATGGTATTTGGAATGATATGAACGAACCGACTATTTTTAAGGTTGAAACAAATACAATGCCTGATAGCAATGTTCATAGAGGAGATAGTGAACTTGGTGGCTGTCAGAATCATTCTTTCTATCACAATGTGTATGGTCTTCTGATGGCAAGATCGACCTATGAAGGCATGAAACTAGCTAGTGAAGAGAAACGTCCTTTTGTTCTTACAAGAGCTGGATTTATTGGCAGCCAACGGTATGCAGCAACATGGACTGGTGATAATCTTTCGACCTGGGAGCATCTTCATATGAGTATCTCCATGGTACTTCAGCTGGGACTTAGTGGTCAGCCATTTTCAGGTGCTGATATTGGTGGATTTGCTGGAAATGCTACACCTAAACTTTTTGGAAGGTGGATGGGTGTTGGTTCCTTGTTTCCCTTTTGTCGAGGGCATTCTGAAGCTTGCACCACTGATCATGTACCTTGGGCTTTTGGGGAAGAGTGTGAAGAAGTTTGCCGATTGGCATTGAAGAGGCGATACCGCCTAATCCCACTTATCTACACTCTTTTTTATTTTGCTCATACACGGGGCACACCAGTGGCAACCCCTACTTTCTTTGCTGATCCAAAAGATCCTAGTCTGAGGAAGCTTGAAAATTCATTTTTGCTCGGTCCAGTCTTAGTGTATGCAAGCACCATACATGCACAGGGGTTGGATAAATTGGAGATTACTTTGCCTAAGGGGATATGGTTGCGTTTTGATTTCAATGATGCACATCCGGATTTGCCAGCCTTATACTTAAAAGGTGGCTCTATCATTCCTGTGGGTCTCTCTCTTCAGCATGTTGAAGAAGCTAACCCTTCAGATGATTTGACTCTTCTCTTGGCTTTAGACGAAAATGGAAAAGCTGAAGGTGTTCTTTTTGAGGATGATGGTGATGGATACGGATTCACAGAAGGCAATTATTTATTAACACATTATGTGGCTAATCTTAAATCATCAGTTGTTACTGTGAGTGTACACAAAACGGAAGGATCATGGGAAAGGCCTAAACGACGCCTGCATATTCAATTATTGCTGGGTGGGGGTGCAATGCTTGATACATGGGGAACTGATGGAGAAGTTCTGCAACTAATCTTGCCTTCTGAGGATGAGGTGTTGAAGCTAGTATCTACTAGTGAGAAGCAATACAAGGACCGCTTGGAAAGTGCAATTCCAATTCCTGATGCGGAAGAGGTTTCTGGACCCAAGAGAACAGAAAGGGCTTTCACTGAATGGAGAAGTGACATAGAAGACCATGTTCGTGAGAGGTCTAAGGAGTGGTCGAATCTGAATGATGGAGGAATTATTGAGAACCGTGATTCTAATGACCCATTTAATACTACGGAGGTTTTCCCTTCTCGAGATGCAATGCTGAATTGGGCCCGAGAAGTAGCAAAAGAGAATGGATTTGTTCTTACTATTTTGAGGTCAGAAACAAGTACAAGAACTAATAAAAAGAATAACAAAGGGAAGACATATGTAATAATGGGTTGTGAAAGGAGTGGAAAATATAGACCATATAAGAATACATTATCTAAGGTGACTAGTACCAAAAAATGTGAGTGTCCCTTCAAGCTAAGGGCAAAAGCTTTGAAAAAGAATGAAAGATGGGTTGTTAAGGTAATGTGTGGTCACCACAACCACGACTTAGGGGAAACATTAGTGGTAGGACATTCATATGCTGGCCGATTAAGTGCTGAAGAGAAGTCTTTAGTCATTGATATGACAAAAAACATGGTGGAGCCGAGAAACATACTACTAACTTTGAAAGATCATAATAATGAGACTACTATTAGGCATATTTATAATGCTCGACAAGCTTATCGATCTTCTCAGAAAGGTCCTAGGACAGAAATGCAACACCTACAAAAGTTATTGGAATATGATCATTATGTATATTGGAATAGAAAGATGGATGATTCTGATGCTATCAGTGATATATTTTGGGCACATCCAGATGCCATCAAACTTCTAAGCGCTTTCCATACTGTCTTGCTCCTTGATAATACTTATAAAGTCAATAGGTATAAATTGCCGCTACTTGAGATTGTTGGTGTTACTTCGACAGAGTTAACATTCTCTGTGGCATTTGCTTATCTAGAGTCTGAGCAAGTTGATAACTTCACTTGGGCACTGCAGAAGTTGAGAGGATTGATTGCCAAAGACAGTGAGATGCCTCCAGTAATTGTAACTGTAAGAGACACTGCTCTGATGAATGCAGTGCAGGCAGTCTTTCCGAGCTCTTCTAATTTGTTATGTCGTTTTCATATAATCAAGAATGTGAAGGCCAAATGCAAGATGATGGTTCATCCGAAGGAGCAATATGACTTGGTGATGGATGCATGGCACAATGTTATGAATTCTCCAAACGAGGGTGAGTATATGCAACGTTTGGCATTATTTGACAGAGTTTGCTCAGATTTTCCAAATTTTGGTGATTATGTGAAAAATACTTGGCTTACTCCTCACAAGGAAAAATTTGTCACGACATGGATAGATCGAGTGATGCATTTGGGTAACACAACTCTCAACAGAGTGGAAACAGCACATTGGAGGTTGGAGAACTTGCTTGAAGATAGTGGGGCGGACATTTGTAGTTGTTGGGATGCTATGAACAACATGATTAAATTGCAACACAACGAGATTAAGCTGTCATTTGAGAAAAGCATAAACACTGTGGAATACAATACTCCATTCTACAAAATGTTGGTGGGATTTGTATCAAGGAGTGCATTGGGTTATATATCTGACCAATATGACCGAATTAAGACCGTTGGCACTGATAGTTCTATATGTGGTTGCACAATTAGAACTACACATGGTCTACCTTGTGCATGTGAACTTGCTAGTTACAATATACCCTTGCAGGTAGTTCAATATCATGGGACTAGGTTCAATTTCAGTTTCCAAGAAATGAATGAAGAGGGGTATGAAGTATCATTTCAACCAGTACCATTGCAGGCAATTCATATTCATTGGAGGAGGTTAAACTTCAGTTTCGAAGTAATGAACGAAGAGGGGTCTGAGGTATCATTGCAACGTGAAATTGATGCTTTGCACAAGCAATTTCAGGAACTTGATTATGCTGGAAAAGTTACCTTAAAGGCGAAATTGCGTGAACTAGCCTTGCCTGATTTAACTTTAATGTGTTCAGCTCCGGAAAAGGTTAAAACAAATGATGCTCCACAGGATTTAGGATGGAAGAGAGATAAATCAGTTGAATGTGATCCTTTGTATTTGGAGCATATAGATTCACTACATTCTGCCCATGGTAGCATGACTGCTCACCCTTCATCTGAGAAACCAGTCCATGAGTCTAATAGTATGGAAGTTTTACCATCAATGGACCACATTCCGGTTGAAATTCATCCATTTAATGAAGGCAATGTAGATGTGAAAGCAGAAGAGAACTGTGGTTAG 4467 0.4106 MARSKRRRSGIVASHIRPKMIFQPILEDGVFRFDCSVKDREAASPSISFVNGKDRDTPISTEKVPLYNPTFEIRLEQQIVKLELPVGSSLYGTGEVSGQLERTGQRVFTWNTDAWGYGPGNTSLYQSHPWVLAVLPSGEGLGILADTTRRCEIDLRKESTIQFVSPSSYPVVTFGPFASPTAVLSSLSKAIGTVFMPPKWSLGYHQCHSSYLSDQRVLEVAKTFQKKCIPCDVIWMDTDYMDGLRVFTFDKKRFEDPMSLVKDLRSSGCKVIWMLDPGIKLEEGYFVYDSGSKCDVWIQNEDQTPFIGEVWPGPCVFPDYTQSKVRAWWANLVKDFISNGVDGIWNDMNEPTIFKVETNTMPDSNVHRGDSELGGCQNHSFYHNVYGLLMARSTYEGMKLASEEKRPFVLTRAGFIGSQRYAATWTGDNLSTWEHLHMSISMVLQLGLSGQPFSGADIGGFAGNATPKLFGRWMGVGSLFPFCRGHSEACTTDHVPWAFGEECEEVCRLALKRRYRLIPLIYTLFYFAHTRGTPVATPTFFADPKDPSLRKLENSFLLGPVLVYASTIHAQGLDKLEITLPKGIWLRFDFNDAHPDLPALYLKGGSIIPVGLSLQHVEEANPSDDLTLLLALDENGKAEGVLFEDDGDGYGFTEGNYLLTHYVANLKSSVVTVSVHKTEGSWERPKRRLHIQLLLGGGAMLDTWGTDGEVLQLILPSEDEVLKLVSTSEKQYKDRLESAIPIPDAEEVSGPKRTERAFTEWRSDIEDHVRERSKEWSNLNDGGIIENRDSNDPFNTTEVFPSRDAMLNWAREVAKENGFVLTILRSETSTRTNKKNNKGKTYVIMGCERSGKYRPYKNTLSKVTSTKKCECPFKLRAKALKKNERWVVKVMCGHHNHDLGETLVVGHSYAGRLSAEEKSLVIDMTKNMVEPRNILLTLKDHNNETTIRHIYNARQAYRSSQKGPRTEMQHLQKLLEYDHYVYWNRKMDDSDAISDIFWAHPDAIKLLSAFHTVLLLDNTYKVNRYKLPLLEIVGVTSTELTFSVAFAYLESEQVDNFTWALQKLRGLIAKDSEMPPVIVTVRDTALMNAVQAVFPSSSNLLCRFHIIKNVKAKCKMMVHPKEQYDLVMDAWHNVMNSPNEGEYMQRLALFDRVCSDFPNFGDYVKNTWLTPHKEKFVTTWIDRVMHLGNTTLNRVETAHWRLENLLEDSGADICSCWDAMNNMIKLQHNEIKLSFEKSINTVEYNTPFYKMLVGFVSRSALGYISDQYDRIKTVGTDSSICGCTIRTTHGLPCACELASYNIPLQVVQYHGTRFNFSFQEMNEEGYEVSFQPVPLQAIHIHWRRLNFSFEVMNEEGSEVSLQREIDALHKQFQELDYAGKVTLKAKLRELALPDLTLMCSAPEKVKTNDAPQDLGWKRDKSVECDPLYLEHIDSLHSAHGSMTAHPSSEKPVHESNSMEVLPSMDHIPVEIHPFNEGNVDVKAEENCG 1488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2263g00004 1488 Pfam Transcription factor AFT 831 899 IPR014842 GO:0000981|GO:0036086
Vium2263g00004 1488 CDD GH31_glucosidase_II_MalA 192 532 - -
Vium2263g00004 1488 Gene3D - 605 730 IPR013780 -
Vium2263g00004 1488 CDD GH31_N 70 192 - -
Vium2263g00004 1488 Pfam Domain of unknown function (DUF5110) 626 694 IPR033403 -
Vium2263g00004 1488 Pfam MULE transposase domain 1013 1109 IPR018289 -
Vium2263g00004 1488 Pfam Galactose mutarotase-like 89 154 IPR025887 -
Vium2263g00004 1488 Gene3D glycosyl hydrolase (family 31) 39 174 - -
Vium2263g00004 1488 Pfam Glycosyl hydrolases family 31 179 608 IPR000322 GO:0004553|GO:0005975
Vium2263g00004 1488 SUPERFAMILY (Trans)glycosidases 183 532 IPR017853 -
Vium2263g00004 1488 ProSitePatterns Glycosyl hydrolases family 31 active site. 343 350 IPR030458 -
Vium2263g00004 1488 Gene3D - 517 600 IPR013780 -
Vium2263g00004 1488 SUPERFAMILY Galactose mutarotase-like 71 160 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vium2263g00004 1488 Gene3D Glycosidases 195 516 - -
Vium2263g00004 1488 PANTHER ALPHA-GLUCOSIDASE 82 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2263g00004 Vium-Chr2263 27028 54427 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2263g00004 20 755 Glycoside Hydrolase AT3G23640 71.332 0.0 1133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vium2263g00004 Glyco_hydro_31 8.6e-126 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2263g00004 - - vra:106777609 2976.04