Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2263g00001 ATGGAGAGCAACGAGATTCTAGAGGAGCTTCTCAACATCGAGGTCGAGATTCAAGATGTTCAAGAACAAATAAGGGCGTTAATTGAGAGACAAGAGAATCTGTACGAGAGAAAATCGGAGCTGAGTGCTATTTTAGAGGCGTGTAAGGAATCTGGAAACGAGGCCAGTAATGTGGCTTCAAGCGCCGTGGAAGATTGGAGTGGGACATTTGAATGGGATTCTGAAGCAGATGATGTTAGGTTGAATGTTTTTGGCATTTCATCTTACCGTGCAAATCAAAGAGAGATAATTAACGCCATTATGAGTGGAAGAGACGTTCTGGTTATTATGGCTGCAGGTGGTGGCAAGAGTCTCTGCTACCAGCTTCCTGCTGTTCTTCGTGAAGGAATTGCTCTAGTTGTCAGTCCTTTGCTTTCCTTAATTCAAGATCAGGTAATGGGTTTGACTGCACTGGGCATTCCTGCGTATATGTTGACTTCAACAAATAAGGGAGATGAGAAGTTCATATACAAGGCTTTGGAGAAGGGAGAGGGGGACCTCAAAGTATTGTACGTCACCCCAGAAAAGATATCAAAAAGCAAGAGGTTTATGTCAAAACTTGAAAAATGTCATCATGCCGGTCGTCTCTCTCTAATTTCAATTGATGAAGCACATTGCTGTAGTCAGTGGGGCCACGACTTTCGACCTGACTACAAGAGCCTCGGTATTCTCAAGACACAGTTTCCTAATGTTCCTATGGTGGCTTTGACTGCAACTGCTACTCAGAGGGTCCAAAACGATCTGACAGAGATGTTGCATATTCCTAGATGTGTCAAATTTGTCAGCACAGTCAATAGGCCAAATTTGTTTTATATGGTAAAGGAAAAGTCATCAGTTGGGAAGGTAGTCATTGATGAAATTGCACAGTTCATTCAAGAATCTTATCCGAATAATGAATCAGGGATTGTTTATTGCTTCTCTAGGAAGGAATGTGAACAGGTTGCGAAGGAGTTGAGGGAGAGAAGAATTTCAGCTGATTATTATCATGCAGATATGGATGTAAATGCTCGGGAAAAAGTTCACATGCGGTGGAGCAATAACAAGCTGCAGGTCATAGTTGGCACAGTAGCTTTTGGTATGGGAATCAATAAACCAGATGTCAGGTTTGTCATCCATCATAGCTTGAGTAAATCAATGGAAACATACTACCAGGAAAGTGGACGAGCTGGCCGAGATGGACTTCCTTCAGAATGCCTACTGTACTTTAGGCCTGGTGATGTTCCACGGCAGAGTTCAATGGTCTTCTATGAAAATACGGGGCTGCAGAATCTCTATGACATAGTACGATATTGTCAGTCCAAAAGACAATGTCGACGAAGTGCCTTTTTCCGGCATTTTGCTGAGCCACTTCAAGAGTGCAATGGGCTGTGTGACATCTGTGCATTATCAAGAGAGGTGAAAGAAGTGGATGTCTCTGATCTTGCAAAACTGATGGTTTCATTCATGCAAAATATGCAAGCAAATGATCAGAGGTCAACAATGTTGCAATTAGTTGATAAAATGAAAATAAAACAGAAGGAACTAGGTTCTGAATTGAAGCGAGAGGAAATTGAGCAGCTCATCTTACACCTTTTATTGGGGCGGTTTTTGGTAATTCGTTGTTCCTTCATCACTGAAAGTTATAAACTTGCACTTAAAATTAGCTATGCATATTGTAGACAAGGCAAGACAACCTCATTACATTTAGGAGTAAAAATGGAAGAGCAAACACTATGTAGAATATTAACATATATGATGACTCTGATTGAGTTTTGTGATTTATCTTTTCATCTACTTTTGAGGCTAAAATGTATGATATATATCAACGTCCTTTTGTTTCGCTAA 1863 0.4079 MESNEILEELLNIEVEIQDVQEQIRALIERQENLYERKSELSAILEACKESGNEASNVASSAVEDWSGTFEWDSEADDVRLNVFGISSYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLREGIALVVSPLLSLIQDQVMGLTALGIPAYMLTSTNKGDEKFIYKALEKGEGDLKVLYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKSLGILKTQFPNVPMVALTATATQRVQNDLTEMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGKVVIDEIAQFIQESYPNNESGIVYCFSRKECEQVAKELRERRISADYYHADMDVNAREKVHMRWSNNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENTGLQNLYDIVRYCQSKRQCRRSAFFRHFAEPLQECNGLCDICALSREVKEVDVSDLAKLMVSFMQNMQANDQRSTMLQLVDKMKIKQKELGSELKREEIEQLILHLLLGRFLVIRCSFITESYKLALKISYAYCRQGKTTSLHLGVKMEEQTLCRILTYMMTLIEFCDLSFHLLLRLKCMIYINVLLFR 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2263g00001 620 Pfam Helicase conserved C-terminal domain 303 405 IPR001650 -
Vium2263g00001 620 SMART helicmild6 325 406 IPR001650 -
Vium2263g00001 620 Pfam DEAD/DEAH box helicase 91 258 IPR011545 GO:0003676|GO:0005524
Vium2263g00001 620 Coils Coil 511 531 - -
Vium2263g00001 620 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 296 445 IPR001650 -
Vium2263g00001 620 PANTHER DNA HELICASE RECQ FAMILY MEMBER 67 539 - -
Vium2263g00001 620 SMART ultradead3 85 287 IPR014001 -
Vium2263g00001 620 Coils Coil 3 37 - -
Vium2263g00001 620 Gene3D - 279 475 IPR027417 -
Vium2263g00001 620 Pfam RecQ zinc-binding 418 474 IPR032284 -
Vium2263g00001 620 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 422 IPR027417 -
Vium2263g00001 620 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 271 IPR014001 -
Vium2263g00001 620 Gene3D - 479 579 IPR036388 -
Vium2263g00001 620 CDD SF2_C_RecQ 279 415 - -
Vium2263g00001 620 CDD DEXHc_RecQ1 71 278 - -
Vium2263g00001 620 NCBIfam RecQ family ATP-dependent DNA helicase 82 505 IPR004589 GO:0004386|GO:0006310
Vium2263g00001 620 FunFam ATP-dependent DNA helicase 46 278 - -
Vium2263g00001 620 Gene3D - 46 278 IPR027417 -
Vium2263g00001 620 FunFam ATP-dependent DNA helicase 279 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2263g00001 Vium-Chr2263 139 10260 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2263g00001 84 420 Eukaryotic Initiation Factors Gene Family AT3G19760 19.714 9.86e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2263g00001 K10899 - gmx:100817635 1007.67