Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2260g00005 ATGCAGTTTTTGATATTCTACTGTGATGAAAAAGCTGAAGACGCTGTTGATTATGAAGATATTGATGAAGAGTATGATGGTCCAGAGACAGAGGCTGCCAATGAAGAAGACTATTTATTGCCAAAAAAAGAATTTTTCTCTGCTGAAGCATCTGTATGTATGGAATCCAAAGCTTCTGTATTTGATGATGAAAATTATGATGAAGAATCTGAGAAGGAGCAAGACTTTCTGAATGAAGATTCTAAACCTGATAATATCTCCTTACTTGAGGAGCAGGAAGAGACTTTGGTAGAGGCATCTAAAGAAGAGAGTGCTCTTGAACGTGAATTACATGTTGACTCACTGCAAAGTGAAGAATTGGATGCCGATGTACAAAAACCTGAGGAGGAAGGGACTGAAGTCCAGAAAAGGTCTATGGCTATGCCGTTGCCTGTTTTATGTGTGGAAGATGGTGTGGCAATTTTACGCTTCTCTGAAATCTTTGGCATTCATGAACCTCTCAGAAAGGGAGAAAAGAGAGAACACCGGCAACCTATTACTAGAGATAGATACAAGTCTTTGGATTTTACTGATGATTTTGTAGAAGAGGATGAAGAGGAGTTCCTCAAGGGTTCCTCCCAGAGTCTCTCACAGACTAAACAAGTTTCTGTAGTTCATAATGATGTATCAGAAAGCAACGATGTTGACTTGGAGTTTCCAAAATTTGGGTTTCTTCATACTGAGCCCTCAGTGGCCAGGAAAGATGATCATCAATCAAAGGACTCGTGTCATAGTGCTGAACCAATGAAAGGGGATTTTGAAGAAGACCTTTCCTGGAAAGATCATCCTTTCATATGGACCAACTTTTATCCTCTTGATCAGCAAGACTGGGAAGATGAAATCATTTGGGGCAATTCTCCTGTTCAAAGTAATAATAATATTGAAAGCTGTGAAGTTTCTGGACCAGAGTTGGGAGTTTCTGGTGGCAGTGAAATAGAAATTGAAAGTGGGATCCAGAATATTCAGCTGGAGCCTCACAAGATACTGGAAGATAAAGATCATAATGTCTTACTCAGCTCGCCTGTCTCGTTGGAGGCCTTTGGCTCAAGGGATTCTTCTGAAGCTAAAACCAATCTAATATCTAGAAGTCTTTTTCATCCCCAACTTTTAAGGTTAGAATCCAGATCTGAAGTGGATAGTTCTATTCTTGCAGATGGAAAAGAGGGTGAGATATCTAAACATAATCAAAGTGGTCAAATTACACGTTTTAGCAAGGCTATATCTAAAAATAGAGACATGATGGAGGGTTCCTGGTTAGACGAGATAATATGGGAGGAGGTTGATCAGCCTGTGGTGAAACCAAAGCTTATCTTTGATCTTCAGGATGATCAAATGCACTTCGAAGTTTTGGATAGCAAGGATGGTGCACATCTTCGTCTTCATGCTGGGGCTATAATTTTAACTCGTTCTTCAAAATCAAGCAGTGGGGACTCATCTGAAGTACCAGGACATGGAAGTCAATATGGATGGCGATATGTGTCTAATGACAAACATTATTCAAATCGTAAAACTTCTCAACAATTGAAATCAAATTCCAAAAAACGCTCGGCACATGGTGTCAAAGTTTTCCACTCTCAACCTGCGTTGAAGCTGCAGACAATGAAATTGAAGTTGAGCAATAAAGATATTGCAAATTTTCACCGGCCAAAAGCATTATGGTATCCCCATGACAATGAGGTTGCTGTCAAAGAACAAGGGAAATTGCCAACACAAGGACCCATGAAGATTATTATCAAGAGTTTGGGTGGCAAGGGGAGTAAATTGCATGTGGATACTGATGAAACTCTCTCAACTGTTAAAGCAAAAGCTTCCAAAAAGCTAGATTTTAAGGCATCGGAAACAGTGAAAATATTTTATTTAGGGAGGGAGCTTGAAGATCAGAAGTCACTTGCTGAACAAAATGTTCAACCAAACTCCTTGATACATCTTGTTCGTTCAAAGATACATTTGTGGCCAAAAGCACAGAGGGTTCCTGGGGAGAACAAGTCCTTGCGTCCTCCTGGGGCATTCAAGAAAAAATCTGATCTGTCTGTAAAAGACGGTCATGTTTTTCTGATGGAGTATTGTGAAGAAAGACCTTTACTTTTGAGCAATGTTGGAATGGGTGCAAGACTTTGTACATACTATCAAAAATGCTCACCAGATGACCAATCTGGCTCTTTATTACGTAACACAGATAGTAGCTTGGGGCACGTTATTTCTCTGGATCCTGCAGATAAATCTCCGTTCCTTGGAGATTTGAAACCTGGTTGCTGTCAGTCATCACTAGAGACAAATATGTATAGAGCACCCGTATTTCCTCATAAAGTTCCACTAACTGACTACCTGCTGGTTCGCTCACCAAAGGGAAAGCTATCATTAAGGCGCATTGATAAAATTAATGTTGTTGGACAGCAGGAGCCACTCATGGAGGTATTTTCACCAGGAAGTAAAAATCTTCAGACTTACATGATGAACAGGCTGTTGGTACACATGTGCCGTGAATTCCAAGCAGCAGAGAAGCGGCACTTGCCTCCTCATATCCGTGTTGATGAATTTCTCTCACAGTTTCCTTACCAGTCGGAAGCATCATTTCGTAAGAAAATCAAGGAATATGCAAATTTACAGAGGGGAGCAAATGGACAGTCGATTTTGGTTAAAAAGAGAAATTTCCGCATTTGGTCAGAGGATGAATTGAGAAAAATGGTTCTGCCGGAGCTTGTTTGTGCCTATGAAAGCATGCAAGCAGGCCTCTACCGACTAAAACATTTAGGAATAACTGAAACACACCCTACAAATATTTCGTCTGCAATGAATCGGCTTCCTGATGAAGCAATAGCATTGGCTGCTGCATCACACATTGAGAGGGAACTGCAGATTACTCCTTGGAACTTGAGTAGCAATTTTGTTGCTTGTACAAGCCAGGGCAAGGAAAATATTGAACGAATGGAAATTACTGGTGTTGGTGATCCTTCTGGTCGAGGCATGGGTTTCAGCTATGCTCGGGCACCTCCAAAGGCACCAGTGTCTAGTGCAATGGTGAAGAAGAAAGCAGCTGCTAACCGTGGAGGTTCCACTGTTACTGGTACAGATGCTGATCTGCGTAGATTAAGCATGGAGGCTGCACGAGAGGTTCTTCTTAAGTTCAATGTTCCTGAGGAAGTCATTGCTAAACAAACCAGGTGGCATCGCATTGCTATGATACGTAAACTTTCAAGTGAGCAAGCTGCATCTGGGGTTAAGGTTGATCCGACAACTATCAGCAAATATGCTCGTGGCCAGCGAATGTCCTTTCTTCAGTTACAGCAGCAGACTAGAGAAAAATGCCAGGAGATTTGGGATCGACAAGTTCAGAGTCTGTCGGCTGTAAATGCTGATGAGAATGAGAGTGATTCGGAAGGTAATAGTGATCTGGATTCTTTTGCTGGAGACCTGGAAAATTTACTTGATGCTGAGGAGTTTGAAGAGGGAGAAGAAGGTACAAATGACTTAAAACGTGACAAGGGAGACGGTGTTAAGGGTCTTAAAATGAGAAGACGCTCAACTTTGGCTCAGGCAGAGGAGGAAATAGAAGATGAAGCCGCTGAGGCTGCTGAATTGTGCAGGTTGCTCATGGATGATGATGAAGCTGATAGGAAGAAAAAGAAGAAAACTAAAGTAACTGGGGAAGAAACAAGATTGGTATCAAAGATGCAATCAAAATTTGCCTTCGACAATGCTGAACAAGTTAAGCAAATAACAAATAGTTTACAATTAGATGGAAATATTCCCTTGAAAGAGGACACGATTACAGATCTTAGGGAGGAGGAAAATTTTGGTGCCAAAAAAAGTAAATCACTGAAGGTCAATAAAGCCAAGAAGAATGATATTGCACCTATTTCTCTTCCCAATAAAAAAATCAAATTGAATATGGGAGAAGGAATTAAGAACCAGGTGTTTAAGGAGAAAAAACCATCAAGGGAAACTTTTGTTTGTGGAGCATGTGGTCAGCCTGGGCATATGCGAACAAACAAGAACTGTCCAAAATATGGTGAAGATCTTGAAACTCAACTTGAATCTGCAGATATGGAAAAATCATCTGGGAAACCCATATCTGTGGACCCCTCCAGTCACTCCCAGTCTAAAACCGCCTCCAAAAAGTCAAGTTCGAAAAGCAACTCAAAGATTACTCCTGTTGACAATTCGGCAAAAATTCCACTGAAATTCAAATGTGGCTCCACAGAGAAATCTTCTGATAAACCTGTAACAGAGACCCTGCAGAACTCTGACAAACCAGTCACTTCGGATTCAGAAACTGCAAAGTCTGCTAAGGTTAATAAGATAATTATTCCCAAAAAAGTGAAACCAGATGATACACAGGCTGAATCTCGTAAGCATGCTGTTGTTATAAGGCCTCCTACTGAATCAAGTAGAGGGCTTCCTGCCGATTCAGGTAGAGGACCTCCTACTGATACAGGCAGAGGTCAGGTTGATTATCACAAGTTACCAATTAAAATACGACCACCAACAGAGGAGCAAAGTCACAAAAGGATTGTTATAAGACGTACGAAGGAGGTTATTGATTTAGAACTGGATAGTCCTGGTGGAAACACTGGACTTCAACACAGAAAGACAAAAAGAATTGTTGAATTGTCAAATTTTGAGAAACAAAAGAAACAGGAGACCGTGTATGGAACTGGAGCTTTTCCAAAATGGAACACTAAAGAGGACAGAAGATGGTGGGAAGAGCAAGAGAAACGAAGAAATGATGCAAGACTTCGAGAAGAAGACAGAGCAAGGAGGCATCACAAAGAAGAAATGAGGATGCTCAAAGAGCAAGAAAGGTTAGATGAAATAAAAAGATTTGAAGAAGATATCAGAAGAGAGAGGGAGGAAGAAGAACGGCAAAAGGCTAAGAAGAAAAAGAAGAAGAAAAAGCCTGATTTAAGAGATGAGTATTTAGATGATCCCAGAGCAAGAAGACATGATAAGAGAATGCCTGAAAGAGACAGGAGTGGAAAAAGGAGATCTGTTGCTGAGTTAGGAAAGCTTAGTGCAGATTATATGCCGCCAACAAAACGCCGAAGAGGGGGAGGGGGAGAGGTTGGTTTGGCAAATATCTTGGAGGGCATTGTGGAAACGATGGTTAAAGATAGGTACGAGCTATCTTATCTTTTCGTGAAACCAGTGTCGAAGAAAGAGGCTCCTGACTACCTGGACATTATAGATACGCCTATGGATCTTTCCAGAATCAGGGAGAGAGTACGGAACATGGAGTACAAGAGCCGAGAAGATTTCAGGCATGACGTTTGGCAGATTACTTTTAATGCACACAAATACAACGACGGTAGAAATCCTGGAATTCCTCCCCTTGCAGATATGCTTTTGGAATATTGTGATTATTTGTTGAATGAGAATGATGATAGCCTCACTTCAGCAGAAGCTGGCATTGAAACTAGAGATTCCTAA 5466 0.4105 MQFLIFYCDEKAEDAVDYEDIDEEYDGPETEAANEEDYLLPKKEFFSAEASVCMESKASVFDDENYDEESEKEQDFLNEDSKPDNISLLEEQEETLVEASKEESALERELHVDSLQSEELDADVQKPEEEGTEVQKRSMAMPLPVLCVEDGVAILRFSEIFGIHEPLRKGEKREHRQPITRDRYKSLDFTDDFVEEDEEEFLKGSSQSLSQTKQVSVVHNDVSESNDVDLEFPKFGFLHTEPSVARKDDHQSKDSCHSAEPMKGDFEEDLSWKDHPFIWTNFYPLDQQDWEDEIIWGNSPVQSNNNIESCEVSGPELGVSGGSEIEIESGIQNIQLEPHKILEDKDHNVLLSSPVSLEAFGSRDSSEAKTNLISRSLFHPQLLRLESRSEVDSSILADGKEGEISKHNQSGQITRFSKAISKNRDMMEGSWLDEIIWEEVDQPVVKPKLIFDLQDDQMHFEVLDSKDGAHLRLHAGAIILTRSSKSSSGDSSEVPGHGSQYGWRYVSNDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHRPKALWYPHDNEVAVKEQGKLPTQGPMKIIIKSLGGKGSKLHVDTDETLSTVKAKASKKLDFKASETVKIFYLGRELEDQKSLAEQNVQPNSLIHLVRSKIHLWPKAQRVPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNVGMGARLCTYYQKCSPDDQSGSLLRNTDSSLGHVISLDPADKSPFLGDLKPGCCQSSLETNMYRAPVFPHKVPLTDYLLVRSPKGKLSLRRIDKINVVGQQEPLMEVFSPGSKNLQTYMMNRLLVHMCREFQAAEKRHLPPHIRVDEFLSQFPYQSEASFRKKIKEYANLQRGANGQSILVKKRNFRIWSEDELRKMVLPELVCAYESMQAGLYRLKHLGITETHPTNISSAMNRLPDEAIALAAASHIERELQITPWNLSSNFVACTSQGKENIERMEITGVGDPSGRGMGFSYARAPPKAPVSSAMVKKKAAANRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVNADENESDSEGNSDLDSFAGDLENLLDAEEFEEGEEGTNDLKRDKGDGVKGLKMRRRSTLAQAEEEIEDEAAEAAELCRLLMDDDEADRKKKKKTKVTGEETRLVSKMQSKFAFDNAEQVKQITNSLQLDGNIPLKEDTITDLREEENFGAKKSKSLKVNKAKKNDIAPISLPNKKIKLNMGEGIKNQVFKEKKPSRETFVCGACGQPGHMRTNKNCPKYGEDLETQLESADMEKSSGKPISVDPSSHSQSKTASKKSSSKSNSKITPVDNSAKIPLKFKCGSTEKSSDKPVTETLQNSDKPVTSDSETAKSAKVNKIIIPKKVKPDDTQAESRKHAVVIRPPTESSRGLPADSGRGPPTDTGRGQVDYHKLPIKIRPPTEEQSHKRIVIRRTKEVIDLELDSPGGNTGLQHRKTKRIVELSNFEKQKKQETVYGTGAFPKWNTKEDRRWWEEQEKRRNDARLREEDRARRHHKEEMRMLKEQERLDEIKRFEEDIRREREEEERQKAKKKKKKKKPDLRDEYLDDPRARRHDKRMPERDRSGKRRSVAELGKLSADYMPPTKRRRGGGGEVGLANILEGIVETMVKDRYELSYLFVKPVSKKEAPDYLDIIDTPMDLSRIRERVRNMEYKSREDFRHDVWQITFNAHKYNDGRNPGIPPLADMLLEYCDYLLNENDDSLTSAEAGIETRDS 1821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2260g00005 1821 MobiDBLite consensus disorder prediction 1332 1518 - -
Vium2260g00005 1821 Pfam Protein of unknown function (DUF3591) 506 1073 IPR022591 -
Vium2260g00005 1821 Pfam Bromodomain 1708 1783 IPR001487 GO:0005515
Vium2260g00005 1821 MobiDBLite consensus disorder prediction 59 84 - -
Vium2260g00005 1821 SMART ubq_7 587 659 IPR000626 GO:0005515
Vium2260g00005 1821 MobiDBLite consensus disorder prediction 1646 1680 - -
Vium2260g00005 1821 MobiDBLite consensus disorder prediction 1369 1399 - -
Vium2260g00005 1821 MobiDBLite consensus disorder prediction 112 136 - -
Vium2260g00005 1821 Gene3D - 569 659 - -
Vium2260g00005 1821 ProSiteProfiles Ubiquitin domain profile. 587 657 IPR000626 GO:0005515
Vium2260g00005 1821 MobiDBLite consensus disorder prediction 1415 1441 - -
Vium2260g00005 1821 Gene3D - 1692 1821 IPR036427 GO:0005515
Vium2260g00005 1821 Pfam Ubiquitin family 589 660 IPR000626 GO:0005515
Vium2260g00005 1821 Coils Coil 1592 1645 - -
Vium2260g00005 1821 MobiDBLite consensus disorder prediction 513 532 - -
Vium2260g00005 1821 ProSiteProfiles Bromodomain profile. 1717 1787 IPR001487 GO:0005515
Vium2260g00005 1821 MobiDBLite consensus disorder prediction 1625 1682 - -
Vium2260g00005 1821 FunFam Transcription initiation factor TFIID subunit 1 569 659 - -
Vium2260g00005 1821 Coils Coil 89 109 - -
Vium2260g00005 1821 MobiDBLite consensus disorder prediction 1165 1180 - -
Vium2260g00005 1821 MobiDBLite consensus disorder prediction 1497 1518 - -
Vium2260g00005 1821 MobiDBLite consensus disorder prediction 112 135 - -
Vium2260g00005 1821 SUPERFAMILY Bromodomain 1687 1809 IPR036427 GO:0005515
Vium2260g00005 1821 MobiDBLite consensus disorder prediction 1582 1613 - -
Vium2260g00005 1821 MobiDBLite consensus disorder prediction 1449 1470 - -
Vium2260g00005 1821 Coils Coil 1182 1209 - -
Vium2260g00005 1821 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 9 1820 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Vium2260g00005 1821 CDD Bromodomain 1706 1802 - -
Vium2260g00005 1821 PRINTS Bromodomain signature 1720 1733 IPR001487 GO:0005515
Vium2260g00005 1821 PRINTS Bromodomain signature 1768 1787 IPR001487 GO:0005515
Vium2260g00005 1821 PRINTS Bromodomain signature 1734 1750 IPR001487 GO:0005515
Vium2260g00005 1821 PRINTS Bromodomain signature 1750 1768 IPR001487 GO:0005515
Vium2260g00005 1821 ProSitePatterns Bromodomain signature. 1722 1779 IPR018359 -
Vium2260g00005 1821 SMART bromo_6 1696 1807 IPR001487 GO:0005515
Vium2260g00005 1821 SUPERFAMILY Ubiquitin-like 557 657 IPR029071 -
Vium2260g00005 1821 CDD Ubl_TAFs_like 587 658 - -
Vium2260g00005 1821 MobiDBLite consensus disorder prediction 1160 1180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2260g00005 Vium-Chr2260 14373 36122 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2260g00005 587 657 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 36.620 7.37e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2260g00005 K03125 - gmx:100780733 3028.42