Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2260g00004 ATGGAATCCAAAGCTTCTGTATTTGATGATGAAAATTATGATGAAGAATCTGAGAAGGAGCAAGACTTTCTGAATGAAGATTCTAAACCTGATAATATCTCCTTACTTGAGGAGCAGGAAGAGACTTTGGTAGAGGCATCTAAAGAAGAGAGTGCTCTTGAACGTGAATTACATGTTGACTCACTGCAAAGTGAAGAATTGGATGCCGATGTACAAAAACCTGAGGAGGAAGGGACTGAAGTCCAGAAAAGGTCTATGGCTATGCCGTTGCCTGTTTTATGTGTGGAAGATGGTGTGGCAATTTTACGCTTCTCTGAAATCTTTGGCATTCATGAACCTCTCAGAAAGGGAGAAAAGAGAGAACACCGGCAACCTATTACTAGAGATAGATACAAGTCTTTGGATTTTACTGATGATTTTGTAGAAGAGGATGAAGAGGAGTTCCTCAAGGGTTCCTCCCAGAGTCTCTCACAGACTAAACAAGTTTCTGTAGTTCATAATGATGTATCAGAAAGCAACGATGTTGACTTGGAGTTTCCAAAATTTGGGTTTCTTCATACTGAGCCCTCAGTGGCCAGGAAAGATGATCATCAATCAAAGGACTCGTGTCATAGTGCTGAACCAATGAAAGGGGATTTTGAAGAAGACCTTTCCTGGAAAGATCATCCTTTCATATGGACCAACTTTTATCCTCTTGATCAGCAAGACTGGGAAGATGAAATCATTTGGGGCAATTCTCCTGTTCAAAGTAATAATAATATTGAAAGCTGTGAAGTTTCTGGACCAGAGTTGGGAGTTTCTGGTGGCAGTGAAATAGAAATTGAAAGTGGGATCCAGAATATTCAGCTGGAGCCTCACAAGATACTGGAAGATAAAGATCATAATGTCTTACTCAGCTCGCCTGTCTCGTTGGAGGCCTTTGGCTCAAGGGATTCTTCTGAAGCTAAAACCAATCTAATATCTAGAAGTCTTTTTCATCCCCAACTTTTAAGGTTAGAATCCAGATCTGAAGTGGATAGTTCTATTCTTGCAGATGGAAAAGAGGGTGAGATATCTAAACATAATCAAAGTGGTCAAATTACACGTTTTAGCAAGGCTATATCTAAAAATAGAGACATGATGGAGGGTTCCTGGTTAGACGAGATAATATGGGAGGAGGTTGATCAGCCTGTGGTGAAACCAAAGCTTATCTTTGATCTTCAGGATGATCAAATGCACTTCGAAGTTTTGGATAGCAAGGATGGTGCACATCTTCGTCTTCATGCTGGGGCTATAATTTTAACTCGTTCTTCAAAATCAAGCAGTGGGGACTCATCTGAAGTACCAGGACATGGAAGTCAATATGGATGGCGATATGTGTCTAATGACAAACATTATTCAAATCGTAAAACTTCTCAACAATTGAAATCAAATTCCAAAAAACGCTCGGCACATGGTGTCAAAGTTTTCCACTCTCAACCTGCGTTGAAGCTGCAGACAATGAAATTGAAGTTGAGCAATAAAGATATTGCAAATTTTCACCGGCCAAAAGCATTATGGTATCCCCATGACAATGAGGTTGCTGTCAAAGAACAAGGGAAATTGCCAACACAAGGACCCATGAAGATTATTATCAAGAGTTTGGGTGGCAAGGGGAGTAAATTGCATGTGGATACTGATGAAACTCTCTCAACTGTTAAAGCAAAAGCTTCCAAAAAGCTAGATTTTAAGGCATCGGAAACAGTGAAAATATTTTATTTAGGGAGGGAGCTTGAAGATCAGAAGTCACTTGCTGAACAAAATGTTCAACCAAACTCCTTGATACATCTTGTTCGTTCAAAGATACATTTGTGGCCAAAAGCACAGAGGGTTCCTGGGGAGAACAAGTCCTTGCGTCCTCCTGGGGCATTCAAGAAAAAATCTGATCTGTCTGTAAAAGACGGTCATGTTTTTCTGATGGAGTATTGTGAAGAAAGACCTTTACTTTTGAGCAATGTTGGAATGGGTGCAAGACTTTGTACATACTATCAAAAATGCTCACCAGATGACCAATCTGGCTCTTTATTACGTAACACAGATAGTAGCTTGGGGCACGTTATTTCTCTGGATCCTGCAGATAAATCTCCGTTCCTTGGAGATTTGAAACCTGGTTGCTGTCAGTCATCACTAGAGACAAATATGTATAGAGCACCCGTATTTCCTCATAAAGTTCCACTAACTGACTACCTGCTGGTTCGCTCACCAAAGGGAAAGCTATCATTAAGGCGCATTGATAAAATTAATGTTGTTGGACAGCAGGAGCCACTCATGGAGGTATTTTCACCAGGAAGTAAAAATCTTCAGACTTACATGATGAACAGGCTGTTGGTACACATGTGCCGTGAATTCCAAGCAGCAGAGAAGCGGCACTTGCCTCCTCATATCCGTGTTGATGAATTTCTCTCACAGTTTCCTTACCAGTCGGAAGCATCATTTCGTAAGAAAATCAAGGAATATGCAAATTTACAGAGGGGAGCAAATGGACAGTCGATTTTGGTTAAAAAGAGAAATTTCCGCATTTGGTCAGAGGATGAATTGAGAAAAATGGTTCTGCCGGAGCTTGTTTGTGCCTATGAAAGCATGCAAGCAGGCCTCTACCGACTAAAACATTTAGGAATAACTGAAACACACCCTACAAATATTTCGTCTGCAATGAATCGGCTTCCTGATGAAGCAATAGCATTGGCTGCTGCATCACACATTGAGAGGGAACTGCAGATTACTCCTTGGAACTTGAGTAGCAATTTTGTTGCTTGTACAAGCCAGGGCAAGGAAAATATTGAACGAATGGAAATTACTGGTGTTGGTGATCCTTCTGGTCGAGGCATGGGTTTCAGCTATGCTCGGGCACCTCCAAAGGCACCAGTGTCTAGTGCAATGGTGAAGAAGAAAGCAGCTGCTAACCGTGGAGGTTCCACTGTTACTGGTACAGATGCTGATCTGCGTAGATTAAGCATGGAGGCTGCACGAGAGGTTCTTCTTAAGTTCAATGTTCCTGAGGAAGTCATTGCTAAACAAACCAGGTGGCATCGCATTGCTATGATACGTAAACTTTCAAGTGAGCAAGCTGCATCTGGGGTTAAGGTTGATCCGACAACTATCAGCAAATATGCTCGTGGCCAGCGAATGTCCTTTCTTCAGTTACAGCAGCAGACTAGAGAAAAATGCCAGGAGATTTGGGATCGACAAGTTCAGAGTCTGTCGGCTGTAAATGCTGATGAGAATGAGAGTGATTCGGAAGGTAATAGTGATCTGGATTCTTTTGCTGGAGACCTGGAAAATTTACTTGATGCTGAGGAGTTTGAAGAGGGAGAAGAAGGTACAAATGACTTAAAACGTGACAAGGGAGACGGTGTTAAGGGTCTTAAAATGAGAAGACGCTCAACTTTGGCTCAGGCAGAGGAGGAAATAGAAGATGAAGCCGCTGAGGCTGCTGAATTGTGCAGGTTGCTCATGGATGATGATGAAGCTGATAGGAAGAAAAAGAAGAAAACTAAAGTAACTGGGGAAGAAACAAGATTGGTATCAAAGATGCAATCAAAATTTGCCTTCGACAATGCTGAACAAGTTAAGCAAATAACAAATAGTTTACAATTAGATGGAAATATTCCCTTGAAAGAGGACACGATTACAGATCTTAGGGAGGAGGAAAATTTTGGTGCCAAAAAAAGTAAATCACTGAAGGTCAATAAAGCCAAGAAGAATGATATTGCACCTATTTCTCTTCCCAATAAAAAAATCAAATTGAATATGGGAGAAGGAATTAAGAACCAGGTGTTTAAGGAGAAAAAACCATCAAGGGAAACTTTTGTTTGTGGAGCATGTGGTCAGCCTGGGCATATGCGAACAAACAAGAACTGTCCAAAATATGGTGAAGATCTTGAAACTCAACTTGAATCTGCAGATATGGAAAAATCATCTGGGAAACCCATATCTGTGGACCCCTCCAGTCACTCCCAGTCTAAAACCGCCTCCAAAAAGTCAAGTTCGAAAAGCAACTCAAAGATTACTCCTGTTGACAATTCGGCAAAAATTCCACTGAAATTCAAATGTGGCTCCACAGAGAAATCTTCTGATAAACCTGTAACAGAGACCCTGCAGAACTCTGACAAACCAGTCACTTCGGATTCAGAAACTGCAAAGTCTGCTAAGGTTAATAAGATAATTATTCCCAAAAAAGTGAAACCAGATGATACACAGGCTGAATCTCGTAAGCATGCTGTTGTTATAAGGCCTCCTACTGAATCAAGTAGAGGGCTTCCTGCCGATTCAGGTAGAGGACCTCCTACTGATACAGGCAGAGGTCAGGTTGATTATCACAAGTTACCAATTAAAATACGACCACCAACAGAGGAGCAAAGTCACAAAAGGATTGTTATAAGACGTACGAAGGAGGTTATTGATTTAGAACTGGATAGTCCTGGTGGAAACACTGGACTTCAACACAGAAAGACAAAAAGAATTGTTGAATTGTCAAATTTTGAGAAACAAAAGAAACAGGAGACCGTGTATGGAACTGGAGCTTTTCCAAAATGGAACACTAAAGAGGACAGAAGATGGTGGGAAGAGCAAGAGAAACGAAGAAATGATGCAAGACTTCGAGAAGAAGACAGAGCAAGGAGGCATCACAAAGAAGAAATGAGGATGCTCAAAGAGCAAGAAAGGTTAGATGAAATAAAAAGATTTGAAGAAGATATCAGAAGAGAGAGGGAGGAAGAAGAACGGCAAAAGGCTAAGAAGAAAAAGAAGAAGAAAAAGCCTGATTTAAGAGATGAGTATTTAGATGATCCCAGAGCAAGAAGACATGATAAGAGAATGCCTGAAAGAGACAGGAGTGGAAAAAGGAGATCTGTTGCTGAGTTAGGAAAGCTTAGTGCAGATTATATGCCGCCAACAAAACGCCGAAGAGGGGGAGGGGGAGAGGTTGGTTTGGCAAATATCTTGGAGGGCATTGTGGAAACGATGGTTAAAGATAGGTACGAGCTATCTTATCTTTTCGTGAAACCAGTGTCGAAGAAAGAGGCTCCTGACTACCTGGACATTATAGATACGCCTATGGATCTTTCCAGAATCAGGGAGAGAGTACGGAACATGGAGTACAAGAGCCGAGAAGATTTCAGGCATGACGTTTGGCAGATTACTTTTAATGCACACAAATACAACGACGGTAGAAATCCTGGAATTCCTCCCCTTGCAGATATGCTTTTGGAATATTGTGATTATTTGTTGAATGAGAATGATGATAGCCTCACTTCAGCAGAAGCTGGCATTGAAACTAGAGATTCCTAA 5307 0.4121 MESKASVFDDENYDEESEKEQDFLNEDSKPDNISLLEEQEETLVEASKEESALERELHVDSLQSEELDADVQKPEEEGTEVQKRSMAMPLPVLCVEDGVAILRFSEIFGIHEPLRKGEKREHRQPITRDRYKSLDFTDDFVEEDEEEFLKGSSQSLSQTKQVSVVHNDVSESNDVDLEFPKFGFLHTEPSVARKDDHQSKDSCHSAEPMKGDFEEDLSWKDHPFIWTNFYPLDQQDWEDEIIWGNSPVQSNNNIESCEVSGPELGVSGGSEIEIESGIQNIQLEPHKILEDKDHNVLLSSPVSLEAFGSRDSSEAKTNLISRSLFHPQLLRLESRSEVDSSILADGKEGEISKHNQSGQITRFSKAISKNRDMMEGSWLDEIIWEEVDQPVVKPKLIFDLQDDQMHFEVLDSKDGAHLRLHAGAIILTRSSKSSSGDSSEVPGHGSQYGWRYVSNDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHRPKALWYPHDNEVAVKEQGKLPTQGPMKIIIKSLGGKGSKLHVDTDETLSTVKAKASKKLDFKASETVKIFYLGRELEDQKSLAEQNVQPNSLIHLVRSKIHLWPKAQRVPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNVGMGARLCTYYQKCSPDDQSGSLLRNTDSSLGHVISLDPADKSPFLGDLKPGCCQSSLETNMYRAPVFPHKVPLTDYLLVRSPKGKLSLRRIDKINVVGQQEPLMEVFSPGSKNLQTYMMNRLLVHMCREFQAAEKRHLPPHIRVDEFLSQFPYQSEASFRKKIKEYANLQRGANGQSILVKKRNFRIWSEDELRKMVLPELVCAYESMQAGLYRLKHLGITETHPTNISSAMNRLPDEAIALAAASHIERELQITPWNLSSNFVACTSQGKENIERMEITGVGDPSGRGMGFSYARAPPKAPVSSAMVKKKAAANRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVNADENESDSEGNSDLDSFAGDLENLLDAEEFEEGEEGTNDLKRDKGDGVKGLKMRRRSTLAQAEEEIEDEAAEAAELCRLLMDDDEADRKKKKKTKVTGEETRLVSKMQSKFAFDNAEQVKQITNSLQLDGNIPLKEDTITDLREEENFGAKKSKSLKVNKAKKNDIAPISLPNKKIKLNMGEGIKNQVFKEKKPSRETFVCGACGQPGHMRTNKNCPKYGEDLETQLESADMEKSSGKPISVDPSSHSQSKTASKKSSSKSNSKITPVDNSAKIPLKFKCGSTEKSSDKPVTETLQNSDKPVTSDSETAKSAKVNKIIIPKKVKPDDTQAESRKHAVVIRPPTESSRGLPADSGRGPPTDTGRGQVDYHKLPIKIRPPTEEQSHKRIVIRRTKEVIDLELDSPGGNTGLQHRKTKRIVELSNFEKQKKQETVYGTGAFPKWNTKEDRRWWEEQEKRRNDARLREEDRARRHHKEEMRMLKEQERLDEIKRFEEDIRREREEEERQKAKKKKKKKKPDLRDEYLDDPRARRHDKRMPERDRSGKRRSVAELGKLSADYMPPTKRRRGGGGEVGLANILEGIVETMVKDRYELSYLFVKPVSKKEAPDYLDIIDTPMDLSRIRERVRNMEYKSREDFRHDVWQITFNAHKYNDGRNPGIPPLADMLLEYCDYLLNENDDSLTSAEAGIETRDS 1768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2260g00004 1768 SMART bromo_6 1643 1754 IPR001487 GO:0005515
Vium2260g00004 1768 Coils Coil 1539 1592 - -
Vium2260g00004 1768 Pfam Ubiquitin family 536 607 IPR000626 GO:0005515
Vium2260g00004 1768 ProSiteProfiles Ubiquitin domain profile. 534 604 IPR000626 GO:0005515
Vium2260g00004 1768 SMART ubq_7 534 606 IPR000626 GO:0005515
Vium2260g00004 1768 MobiDBLite consensus disorder prediction 1572 1629 - -
Vium2260g00004 1768 MobiDBLite consensus disorder prediction 1 83 - -
Vium2260g00004 1768 MobiDBLite consensus disorder prediction 1279 1465 - -
Vium2260g00004 1768 ProSiteProfiles Bromodomain profile. 1664 1734 IPR001487 GO:0005515
Vium2260g00004 1768 MobiDBLite consensus disorder prediction 1316 1346 - -
Vium2260g00004 1768 FunFam Transcription initiation factor TFIID subunit 1 516 606 - -
Vium2260g00004 1768 ProSitePatterns Bromodomain signature. 1669 1726 IPR018359 -
Vium2260g00004 1768 MobiDBLite consensus disorder prediction 1444 1465 - -
Vium2260g00004 1768 Gene3D - 516 606 - -
Vium2260g00004 1768 MobiDBLite consensus disorder prediction 1529 1560 - -
Vium2260g00004 1768 MobiDBLite consensus disorder prediction 1396 1417 - -
Vium2260g00004 1768 Gene3D - 1639 1768 IPR036427 GO:0005515
Vium2260g00004 1768 CDD Ubl_TAFs_like 534 605 - -
Vium2260g00004 1768 Coils Coil 1129 1156 - -
Vium2260g00004 1768 Pfam Protein of unknown function (DUF3591) 453 1020 IPR022591 -
Vium2260g00004 1768 SUPERFAMILY Bromodomain 1634 1756 IPR036427 GO:0005515
Vium2260g00004 1768 CDD Bromodomain 1653 1749 - -
Vium2260g00004 1768 Coils Coil 36 56 - -
Vium2260g00004 1768 MobiDBLite consensus disorder prediction 460 479 - -
Vium2260g00004 1768 MobiDBLite consensus disorder prediction 1107 1127 - -
Vium2260g00004 1768 SUPERFAMILY Ubiquitin-like 504 604 IPR029071 -
Vium2260g00004 1768 MobiDBLite consensus disorder prediction 1362 1388 - -
Vium2260g00004 1768 MobiDBLite consensus disorder prediction 1593 1627 - -
Vium2260g00004 1768 MobiDBLite consensus disorder prediction 22 82 - -
Vium2260g00004 1768 PRINTS Bromodomain signature 1715 1734 IPR001487 GO:0005515
Vium2260g00004 1768 PRINTS Bromodomain signature 1697 1715 IPR001487 GO:0005515
Vium2260g00004 1768 PRINTS Bromodomain signature 1681 1697 IPR001487 GO:0005515
Vium2260g00004 1768 PRINTS Bromodomain signature 1667 1680 IPR001487 GO:0005515
Vium2260g00004 1768 Pfam Bromodomain 1655 1730 IPR001487 GO:0005515
Vium2260g00004 1768 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 16 1767 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Vium2260g00004 1768 MobiDBLite consensus disorder prediction 1112 1127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2260g00004 Vium-Chr2260 14373 36122 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2260g00004 534 604 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 36.620 7.08e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2260g00004 K03125 - gmx:100780733 2937.52