Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2260g00003 ATGAAGATTCTAAACCTGATAATATCTCCTTACTTGTTCACATATGCTAGCTTTGTTCTTTCAGAGGAGCAGGAAGAGACTTTGGTAGAGGCATCTAAAGAAGAGAGTGCTCTTGAACGTGAATTACATGTTGACTCACTGCAAAGTGAAGAATTGGATGCCGATGTACAAAAACCTGAGGAGGAAGGGACTGAAGTCCAGAAAAGGTCTATGGCTATGCCGTTGCCTGTTTTATGTGTGGAAGATGGTGTGGCAATTTTACGCTTCTCTGAAATCTTTGGCATTCATGAACCTCTCAGAAAGGGAGAAAAGAGAGAACACCGGCAACCTATTACTAGAGATAGATACAAGTCTTTGGATTTTACTGATGATTTTGTAGAAGAGGATGAAGAGGAGTTCCTCAAGGGTTCCTCCCAGAGTCTCTCACAGACTAAACAAGTTTCTGTAGTTCATAATGATGTATCAGAAAGCAACGATGTTGACTTGGAGTTTCCAAAATTTGGGTTTCTTCATACTGAGCCCTCAGTGGCCAGGAAAGATGATCATCAATCAAAGGACTCGTGTCATAGTGCTGAACCAATGAAAGGGGATTTTGAAGAAGACCTTTCCTGGAAAGATCATCCTTTCATATGGACCAACTTTTATCCTCTTGATCAGCAAGACTGGGAAGATGAAATCATTTGGGGCAATTCTCCTGTTCAAAGTAATAATAATATTGAAAGCTGTGAAGTTTCTGGACCAGAGTTGGGAGTTTCTGGTGGCAGTGAAATAGAAATTGAAAGTGGGATCCAGAATATTCAGCTGGAGCCTCACAAGATACTGGAAGATAAAGATCATAATGTCTTACTCAGCTCGCCTGTCTCGTTGGAGGCCTTTGGCTCAAGGGATTCTTCTGAAGCTAAAACCAATCTAATATCTAGAAGTCTTTTTCATCCCCAACTTTTAAGGTTAGAATCCAGATCTGAAGTGGATAGTTCTATTCTTGCAGATGGAAAAGAGGGTGAGATATCTAAACATAATCAAAGTGGTCAAATTACACGTTTTAGCAAGGCTATATCTAAAAATAGAGACATGATGGAGGGTTCCTGGTTAGACGAGATAATATGGGAGGAGGTTGATCAGCCTGTGGTGAAACCAAAGCTTATCTTTGATCTTCAGGATGATCAAATGCACTTCGAAGTTTTGGATAGCAAGGATGGTGCACATCTTCGTCTTCATGCTGGGGCTATAATTTTAACTCGTTCTTCAAAATCAAGCAGTGGGGACTCATCTGAAGTACCAGGACATGGAAGTCAATATGGATGGCGATATGTGTCTAATGACAAACATTATTCAAATCGTAAAACTTCTCAACAATTGAAATCAAATTCCAAAAAACGCTCGGCACATGGTGTCAAAGTTTTCCACTCTCAACCTGCGTTGAAGCTGCAGACAATGAAATTGAAGTTGAGCAATAAAGATATTGCAAATTTTCACCGGCCAAAAGCATTATGGTATCCCCATGACAATGAGGTTGCTGTCAAAGAACAAGGGAAATTGCCAACACAAGGACCCATGAAGATTATTATCAAGAGTTTGGGTGGCAAGGGGAGTAAATTGCATGTGGATACTGATGAAACTCTCTCAACTGTTAAAGCAAAAGCTTCCAAAAAGCTAGATTTTAAGGCATCGGAAACAGTGAAAATATTTTATTTAGGGAGGGAGCTTGAAGATCAGAAGTCACTTGCTGAACAAAATGTTCAACCAAACTCCTTGATACATCTTGTTCGTTCAAAGATACATTTGTGGCCAAAAGCACAGAGGGTTCCTGGGGAGAACAAGTCCTTGCGTCCTCCTGGGGCATTCAAGAAAAAATCTGATCTGTCTGTAAAAGACGGTCATGTTTTTCTGATGGAGTATTGTGAAGAAAGACCTTTACTTTTGAGCAATGTTGGAATGGGTGCAAGACTTTGTACATACTATCAAAAATGCTCACCAGATGACCAATCTGGCTCTTTATTACGTAACACAGATAGTAGCTTGGGGCACGTTATTTCTCTGGATCCTGCAGATAAATCTCCGTTCCTTGGAGATTTGAAACCTGGTTGCTGTCAGTCATCACTAGAGACAAATATGTATAGAGCACCCGTATTTCCTCATAAAGTTCCACTAACTGACTACCTGCTGGTTCGCTCACCAAAGGGAAAGCTATCATTAAGGCGCATTGATAAAATTAATGTTGTTGGACAGCAGGAGCCACTCATGGAGGTATTTTCACCAGGAAGTAAAAATCTTCAGACTTACATGATGAACAGGCTGTTGGTACACATGTGCCGTGAATTCCAAGCAGCAGAGAAGCGGCACTTGCCTCCTCATATCCGTGTTGATGAATTTCTCTCACAGTTTCCTTACCAGTCGGAAGCATCATTTCGTAAGAAAATCAAGGAATATGCAAATTTACAGAGGGGAGCAAATGGACAGTCGATTTTGGTTAAAAAGAGAAATTTCCGCATTTGGTCAGAGGATGAATTGAGAAAAATGGTTCTGCCGGAGCTTGTTTGTGCCTATGAAAGCATGCAAGCAGGCCTCTACCGACTAAAACATTTAGGAATAACTGAAACACACCCTACAAATATTTCGTCTGCAATGAATCGGCTTCCTGATGAAGCAATAGCATTGGCTGCTGCATCACACATTGAGAGGGAACTGCAGATTACTCCTTGGAACTTGAGTAGCAATTTTGTTGCTTGTACAAGCCAGGGCAAGGAAAATATTGAACGAATGGAAATTACTGGTGTTGGTGATCCTTCTGGTCGAGGCATGGGTTTCAGCTATGCTCGGGCACCTCCAAAGGCACCAGTGTCTAGTGCAATGGTGAAGAAGAAAGCAGCTGCTAACCGTGGAGGTTCCACTGTTACTGGTACAGATGCTGATCTGCGTAGATTAAGCATGGAGGCTGCACGAGAGGTTCTTCTTAAGTTCAATGTTCCTGAGGAAGTCATTGCTAAACAAACCAGGTGGCATCGCATTGCTATGATACGTAAACTTTCAAGTGAGCAAGCTGCATCTGGGGTTAAGGTTGATCCGACAACTATCAGCAAATATGCTCGTGGCCAGCGAATGTCCTTTCTTCAGTTACAGCAGCAGACTAGAGAAAAATGCCAGGAGATTTGGGATCGACAAGTTCAGAGTCTGTCGGCTGTAAATGCTGATGAGAATGAGAGTGATTCGGAAGGTAATAGTGATCTGGATTCTTTTGCTGGAGACCTGGAAAATTTACTTGATGCTGAGGAGTTTGAAGAGGGAGAAGAAGGTACAAATGACTTAAAACGTGACAAGGGAGACGGTGTTAAGGGTCTTAAAATGAGAAGACGCTCAACTTTGGCTCAGGCAGAGGAGGAAATAGAAGATGAAGCCGCTGAGGCTGCTGAATTGTGCAGGTTGCTCATGGATGATGATGAAGCTGATAGGAAGAAAAAGAAGAAAACTAAAGTAACTGGGGAAGAAACAAGATTGGTATCAAAGATGCAATCAAAATTTGCCTTCGACAATGCTGAACAAGTTAAGCAAATAACAAATAGTTTACAATTAGATGGAAATATTCCCTTGAAAGAGGACACGATTACAGATCTTAGGGAGGAGGAAAATTTTGGTGCCAAAAAAAGTAAATCACTGAAGGTCAATAAAGCCAAGAAGAATGATATTGCACCTATTTCTCTTCCCAATAAAAAAATCAAATTGAATATGGGAGAAGGAATTAAGAACCAGGTGTTTAAGGAGAAAAAACCATCAAGGGAAACTTTTGTTTGTGGAGCATGTGGTCAGCCTGGGCATATGCGAACAAACAAGAACTGTCCAAAATATGGTGAAGATCTTGAAACTCAACTTGAATCTGCAGATATGGAAAAATCATCTGGGAAACCCATATCTGTGGACCCCTCCAGTCACTCCCAGTCTAAAACCGCCTCCAAAAAGTCAAGTTCGAAAAGCAACTCAAAGATTACTCCTGTTGACAATTCGGCAAAAATTCCACTGAAATTCAAATGTGGCTCCACAGAGAAATCTTCTGATAAACCTGTAACAGAGACCCTGCAGAACTCTGACAAACCAGTCACTTCGGATTCAGAAACTGCAAAGTCTGCTAAGGTTAATAAGATAATTATTCCCAAAAAAGTGAAACCAGATGATACACAGGCTGAATCTCGTAAGCATGCTGTTGTTATAAGGCCTCCTACTGAATCAAGTAGAGGGCTTCCTGCCGATTCAGGTAGAGGACCTCCTACTGATACAGGCAGAGGTCAGGTTGATTATCACAAGTTACCAATTAAAATACGACCACCAACAGAGGAGCAAAGTCACAAAAGGATTGTTATAAGACGTACGAAGGAGGTTATTGATTTAGAACTGGATAGTCCTGGTGGAAACACTGGACTTCAACACAGAAAGACAAAAAGAATTGTTGAATTGTCAAATTTTGAGAAACAAAAGAAACAGGAGACCGTGTATGGAACTGGAGCTTTTCCAAAATGGAACACTAAAGAGGACAGAAGATGGTGGGAAGAGCAAGAGAAACGAAGAAATGATGCAAGACTTCGAGAAGAAGACAGAGCAAGGAGGCATCACAAAGAAGAAATGAGGATGCTCAAAGAGCAAGAAAGGTTAGATGAAATAAAAAGATTTGAAGAAGATATCAGAAGAGAGAGGGAGGAAGAAGAACGGCAAAAGGCTAAGAAGAAAAAGAAGAAGAAAAAGCCTGATTTAAGAGATGAGTATTTAGATGATCCCAGAGCAAGAAGACATGATAAGAGAATGCCTGAAAGAGACAGGAGTGGAAAAAGGAGATCTGTTGCTGAGTTAGGAAAGCTTAGTGCAGATTATATGCCGCCAACAAAACGCCGAAGAGGGGGAGGGGGAGAGGTTGGTTTGGCAAATATCTTGGAGGGCATTGTGGAAACGATGGTTAAAGATAGGTACGAGCTATCTTATCTTTTCGTGAAACCAGTGTCGAAGAAAGAGGCTCCTGACTACCTGGACATTATAGATACGCCTATGGATCTTTCCAGAATCAGGGAGAGAGTACGGAACATGGAGTACAAGAGCCGAGAAGATTTCAGGCATGACGTTTGGCAGATTACTTTTAATGCACACAAATACAACGACGGTAGAAATCCTGGAATTCCTCCCCTTGCAGATATGCTTTTGGAATATTGTGATTATTTGTTGAATGAGAATGATGATAGCCTCACTTCAGCAGAAGCTGGCATTGAAACTAGAGATTCCTAA 5262 0.4128 MKILNLIISPYLFTYASFVLSEEQEETLVEASKEESALERELHVDSLQSEELDADVQKPEEEGTEVQKRSMAMPLPVLCVEDGVAILRFSEIFGIHEPLRKGEKREHRQPITRDRYKSLDFTDDFVEEDEEEFLKGSSQSLSQTKQVSVVHNDVSESNDVDLEFPKFGFLHTEPSVARKDDHQSKDSCHSAEPMKGDFEEDLSWKDHPFIWTNFYPLDQQDWEDEIIWGNSPVQSNNNIESCEVSGPELGVSGGSEIEIESGIQNIQLEPHKILEDKDHNVLLSSPVSLEAFGSRDSSEAKTNLISRSLFHPQLLRLESRSEVDSSILADGKEGEISKHNQSGQITRFSKAISKNRDMMEGSWLDEIIWEEVDQPVVKPKLIFDLQDDQMHFEVLDSKDGAHLRLHAGAIILTRSSKSSSGDSSEVPGHGSQYGWRYVSNDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHRPKALWYPHDNEVAVKEQGKLPTQGPMKIIIKSLGGKGSKLHVDTDETLSTVKAKASKKLDFKASETVKIFYLGRELEDQKSLAEQNVQPNSLIHLVRSKIHLWPKAQRVPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNVGMGARLCTYYQKCSPDDQSGSLLRNTDSSLGHVISLDPADKSPFLGDLKPGCCQSSLETNMYRAPVFPHKVPLTDYLLVRSPKGKLSLRRIDKINVVGQQEPLMEVFSPGSKNLQTYMMNRLLVHMCREFQAAEKRHLPPHIRVDEFLSQFPYQSEASFRKKIKEYANLQRGANGQSILVKKRNFRIWSEDELRKMVLPELVCAYESMQAGLYRLKHLGITETHPTNISSAMNRLPDEAIALAAASHIERELQITPWNLSSNFVACTSQGKENIERMEITGVGDPSGRGMGFSYARAPPKAPVSSAMVKKKAAANRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVNADENESDSEGNSDLDSFAGDLENLLDAEEFEEGEEGTNDLKRDKGDGVKGLKMRRRSTLAQAEEEIEDEAAEAAELCRLLMDDDEADRKKKKKTKVTGEETRLVSKMQSKFAFDNAEQVKQITNSLQLDGNIPLKEDTITDLREEENFGAKKSKSLKVNKAKKNDIAPISLPNKKIKLNMGEGIKNQVFKEKKPSRETFVCGACGQPGHMRTNKNCPKYGEDLETQLESADMEKSSGKPISVDPSSHSQSKTASKKSSSKSNSKITPVDNSAKIPLKFKCGSTEKSSDKPVTETLQNSDKPVTSDSETAKSAKVNKIIIPKKVKPDDTQAESRKHAVVIRPPTESSRGLPADSGRGPPTDTGRGQVDYHKLPIKIRPPTEEQSHKRIVIRRTKEVIDLELDSPGGNTGLQHRKTKRIVELSNFEKQKKQETVYGTGAFPKWNTKEDRRWWEEQEKRRNDARLREEDRARRHHKEEMRMLKEQERLDEIKRFEEDIRREREEEERQKAKKKKKKKKPDLRDEYLDDPRARRHDKRMPERDRSGKRRSVAELGKLSADYMPPTKRRRGGGGEVGLANILEGIVETMVKDRYELSYLFVKPVSKKEAPDYLDIIDTPMDLSRIRERVRNMEYKSREDFRHDVWQITFNAHKYNDGRNPGIPPLADMLLEYCDYLLNENDDSLTSAEAGIETRDS 1753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2260g00003 1753 Coils Coil 1114 1141 - -
Vium2260g00003 1753 Pfam Bromodomain 1640 1715 IPR001487 GO:0005515
Vium2260g00003 1753 SMART ubq_7 519 591 IPR000626 GO:0005515
Vium2260g00003 1753 Coils Coil 21 41 - -
Vium2260g00003 1753 MobiDBLite consensus disorder prediction 1097 1112 - -
Vium2260g00003 1753 SUPERFAMILY Bromodomain 1619 1741 IPR036427 GO:0005515
Vium2260g00003 1753 MobiDBLite consensus disorder prediction 1429 1450 - -
Vium2260g00003 1753 ProSiteProfiles Bromodomain profile. 1649 1719 IPR001487 GO:0005515
Vium2260g00003 1753 MobiDBLite consensus disorder prediction 1347 1373 - -
Vium2260g00003 1753 MobiDBLite consensus disorder prediction 1514 1545 - -
Vium2260g00003 1753 CDD Bromodomain 1638 1734 - -
Vium2260g00003 1753 Pfam Ubiquitin family 521 592 IPR000626 GO:0005515
Vium2260g00003 1753 CDD Ubl_TAFs_like 519 590 - -
Vium2260g00003 1753 Pfam Protein of unknown function (DUF3591) 438 1005 IPR022591 -
Vium2260g00003 1753 MobiDBLite consensus disorder prediction 1092 1112 - -
Vium2260g00003 1753 Gene3D - 1624 1753 IPR036427 GO:0005515
Vium2260g00003 1753 Gene3D - 501 591 - -
Vium2260g00003 1753 MobiDBLite consensus disorder prediction 1578 1612 - -
Vium2260g00003 1753 FunFam Transcription initiation factor TFIID subunit 1 501 591 - -
Vium2260g00003 1753 MobiDBLite consensus disorder prediction 40 68 - -
Vium2260g00003 1753 MobiDBLite consensus disorder prediction 1264 1450 - -
Vium2260g00003 1753 MobiDBLite consensus disorder prediction 1301 1331 - -
Vium2260g00003 1753 ProSitePatterns Bromodomain signature. 1654 1711 IPR018359 -
Vium2260g00003 1753 ProSiteProfiles Ubiquitin domain profile. 519 589 IPR000626 GO:0005515
Vium2260g00003 1753 MobiDBLite consensus disorder prediction 1557 1614 - -
Vium2260g00003 1753 MobiDBLite consensus disorder prediction 40 67 - -
Vium2260g00003 1753 MobiDBLite consensus disorder prediction 445 464 - -
Vium2260g00003 1753 SMART bromo_6 1628 1739 IPR001487 GO:0005515
Vium2260g00003 1753 MobiDBLite consensus disorder prediction 1381 1402 - -
Vium2260g00003 1753 PRINTS Bromodomain signature 1666 1682 IPR001487 GO:0005515
Vium2260g00003 1753 PRINTS Bromodomain signature 1700 1719 IPR001487 GO:0005515
Vium2260g00003 1753 PRINTS Bromodomain signature 1682 1700 IPR001487 GO:0005515
Vium2260g00003 1753 PRINTS Bromodomain signature 1652 1665 IPR001487 GO:0005515
Vium2260g00003 1753 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 21 1752 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Vium2260g00003 1753 Coils Coil 1524 1577 - -
Vium2260g00003 1753 SUPERFAMILY Ubiquitin-like 489 589 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2260g00003 Vium-Chr2260 14373 36122 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2260g00003 519 589 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 36.620 6.69e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2260g00003 K03125 - gmx:100780733 2882.82