Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2260g00002 ATGGGTTACGATTCGGCTAGCCCCTCGCAGGATGGGAGGGACGAAGATGATGAAGAAGAATATGAGGAGTCTGGCAAGGGTAATCGGTTTCTTGGGTTCATGTTTGGAAATGTAGATAATTCTGGTGATCTCGATGTTGACTATCTTGATGAGGATGCAAAGGAGCATCTTTCTGCATTAGCCGATAAGTTGGGTCCATCACTGACAGATATAGATTTGTCAGGAAAATCACCACAAACACCACCTGACGTTGTTGAACAAGACTGTGATGAAAAAGCTGAAGACGCTGTTGATTATGAAGATATTGATGAAGAGTATGATGGTCCAGAGACAGAGGCTGCCAATGAAGAAGACTATTTATTGCCAAAAAAAGAATTTTTCTCTGCTGAAGCATCTGTATGTATGGAATCCAAAGCTTCTGTATTTGATGATGAAAATTATGATGAAGAATCTGAGAAGGAGCAAGACTTTCTGAATGAAGATTCTAAACCTGATAATATCTCCTTACTTGAGGAGCAGGAAGAGACTTTGGTAGAGGCATCTAAAGAAGAGAGTGCTCTTGAACGTGAATTACATGTTGACTCACTGCAAAGTGAAGAATTGGATGCCGATGTACAAAAACCTGAGGAGGAAGGGACTGAAGTCCAGAAAAGGTCTATGGCTATGCCGTTGCCTGTTTTATGTGTGGAAGATGGTGTGGCAATTTTACGCTTCTCTGAAATCTTTGGCATTCATGAACCTCTCAGAAAGGGAGAAAAGAGAGAACACCGGCAACCTATTACTAGAGATAGATACAAGTCTTTGGATTTTACTGATGATTTTGTAGAAGAGGATGAAGAGGAGTTCCTCAAGGGTTCCTCCCAGAGTCTCTCACAGACTAAACAAGTTTCTGTAGTTCATAATGATGTATCAGAAAGCAACGATGTTGACTTGGAGTTTCCAAAATTTGGGTTTCTTCATACTGAGCCCTCAGTGGCCAGGAAAGATGATCATCAATCAAAGGACTCGTGTCATAGTGCTGAACCAATGAAAGGGGATTTTGAAGAAGACCTTTCCTGGAAAGATCATCCTTTCATATGGACCAACTTTTATCCTCTTGATCAGCAAGACTGGGAAGATGAAATCATTTGGGGCAATTCTCCTGTTCAAAGTAATAATAATATTGAAAGCTGTGAAGTTTCTGGACCAGAGTTGGGAGTTTCTGGTGGCAGTGAAATAGAAATTGAAAGTGGGATCCAGAATATTCAGCTGGAGCCTCACAAGATACTGGAAGATAAAGATCATAATGTCTTACTCAGCTCGCCTGTCTCGTTGGAGGCCTTTGGCTCAAGGGATTCTTCTGAAGCTAAAACCAATCTAATATCTAGAAGTCTTTTTCATCCCCAACTTTTAAGGTTAGAATCCAGATCTGAAGTGGATAGTTCTATTCTTGCAGATGGAAAAGAGGGTGAGATATCTAAACATAATCAAAGTGGTCAAATTACACGTTTTAGCAAGGCTATATCTAAAAATAGAGACATGATGGAGGGTTCCTGGTTAGACGAGATAATATGGGAGGAGGTTGATCAGCCTGTGGTGAAACCAAAGCTTATCTTTGATCTTCAGGATGATCAAATGCACTTCGAAGTTTTGGATAGCAAGGATGGTGCACATCTTCGTCTTCATGCTGGGGCTATAATTTTAACTCGTTCTTCAAAATCAAGCAGTGGGGACTCATCTGAAGTACCAGGACATGGAAGTCAATATGGATGGCGATATGTGTCTAATGACAAACATTATTCAAATCGTAAAACTTCTCAACAATTGAAATCAAATTCCAAAAAACGCTCGGCACATGGTGTCAAAGTTTTCCACTCTCAACCTGCGTTGAAGCTGCAGACAATGAAATTGAAGTTGAGCAATAAAGATATTGCAAATTTTCACCGGCCAAAAGCATTATGGTATCCCCATGACAATGAGGTTGCTGTCAAAGAACAAGGGAAATTGCCAACACAAGGACCCATGAAGATTATTATCAAGAGTTTGGGTGGCAAGGGGAGTAAATTGCATGTGGATACTGATGAAACTCTCTCAACTGTTAAAGCAAAAGCTTCCAAAAAGCTAGATTTTAAGGCATCGGAAACAGTGAAAATATTTTATTTAGGGAGGGAGCTTGAAGATCAGAAGTCACTTGCTGAACAAAATGTTCAACCAAACTCCTTGATACATCTTGTTCGTTCAAAGATACATTTGTGGCCAAAAGCACAGAGGGTTCCTGGGGAGAACAAGTCCTTGCGTCCTCCTGGGGCATTCAAGAAAAAATCTGATCTGTCTGTAAAAGACGGTCATGTTTTTCTGATGGAGTATTGTGAAGAAAGACCTTTACTTTTGAGCAATGTTGGAATGGGTGCAAGACTTTGTACATACTATCAAAAATGCTCACCAGATGACCAATCTGGCTCTTTATTACGTAACACAGATAGTAGCTTGGGGCACGTTATTTCTCTGGATCCTGCAGATAAATCTCCGTTCCTTGGAGATTTGAAACCTGGTTGCTGTCAGTCATCACTAGAGACAAATATGTATAGAGCACCCGTATTTCCTCATAAAGTTCCACTAACTGACTACCTGCTGGTTCGCTCACCAAAGGGAAAGCTATCATTAAGGCGCATTGATAAAATTAATGTTGTTGGACAGCAGGAGCCACTCATGGAGGTATTTTCACCAGGAAGTAAAAATCTTCAGACTTACATGATGAACAGGCTGTTGGTACACATGTGCCGTGAATTCCAAGCAGCAGAGAAGCGGCACTTGCCTCCTCATATCCGTGTTGATGAATTTCTCTCACAGTTTCCTTACCAGTCGGAAGCATCATTTCGTAAGAAAATCAAGGAATATGCAAATTTACAGAGGGGAGCAAATGGACAGTCGATTTTGGTTAAAAAGAGAAATTTCCGCATTTGGTCAGAGGATGAATTGAGAAAAATGGTTCTGCCGGAGCTTGTTTGTGCCTATGAAAGCATGCAAGCAGGCCTCTACCGACTAAAACATTTAGGAATAACTGAAACACACCCTACAAATATTTCGTCTGCAATGAATCGGCTTCCTGATGAAGCAATAGCATTGGCTGCTGCATCACACATTGAGAGGGAACTGCAGATTACTCCTTGGAACTTGAGTAGCAATTTTGTTGCTTGTACAAGCCAGGGCAAGGAAAATATTGAACGAATGGAAATTACTGGTGTTGGTGATCCTTCTGGTCGAGGCATGGGTTTCAGCTATGCTCGGGCACCTCCAAAGGCACCAGTGTCTAGTGCAATGGTGAAGAAGAAAGCAGCTGCTAACCGTGGAGGTTCCACTGTTACTGGTACAGATGCTGATCTGCGTAGATTAAGCATGGAGGCTGCACGAGAGGTTCTTCTTAAGTTCAATGTTCCTGAGGAAGTCATTGCTAAACAAACCAGGTGGCATCGCATTGCTATGATACGTAAACTTTCAAGTGAGCAAGCTGCATCTGGGGTTAAGGTTGATCCGACAACTATCAGCAAATATGCTCGTGGCCAGCGAATGTCCTTTCTTCAGTTACAGCAGCAGACTAGAGAAAAATGCCAGGAGATTTGGGATCGACAAGTTCAGAGTCTGTCGGCTGTAAATGCTGATGAGAATGAGAGTGATTCGGAAGGTAATAGTGATCTGGATTCTTTTGCTGGAGACCTGGAAAATTTACTTGATGCTGAGGAGTTTGAAGAGGGAGAAGAAGGTACAAATGACTTAAAACGTGACAAGGGAGACGGTGTTAAGGGTCTTAAAATGAGAAGACGCTCAACTTTGGCTCAGGCAGAGGAGGAAATAGAAGATGAAGCCGCTGAGGCTGCTGAATTGTGCAGGTTGCTCATGGATGATGATGAAGCTGATAGGAAGAAAAAGAAGAAAACTAAAGTAACTGGGGAAGAAACAAGATTGGTATCAAAGATGCAATCAAAATTTGCCTTCGACAATGCTGAACAAGTTAAGCAAATAACAAATAGTTTACAATTAGATGGAAATATTCCCTTGAAAGAGGACACGATTACAGATCTTAGGGAGGAGGAAAATTTTGGTGCCAAAAAAAGTAAATCACTGAAGGTCAATAAAGCCAAGAAGAATGATATTGCACCTATTTCTCTTCCCAATAAAAAAATCAAATTGAATATGGGAGAAGGAATTAAGAACCAGGTGTTTAAGGAGAAAAAACCATCAAGGGAAACTTTTGTTTGTGGAGCATGTGGTCAGCCTGGGCATATGCGAACAAACAAGAACTGTCCAAAATATGGTGAAGATCTTGAAACTCAACTTGAATCTGCAGATATGGAAAAATCATCTGGGAAACCCATATCTGTGGACCCCTCCAGTCACTCCCAGTCTAAAACCGCCTCCAAAAAGTCAAGTTCGAAAAGCAACTCAAAGATTACTCCTGTTGACAATTCGGCAAAAATTCCACTGAAATTCAAATGTGGCTCCACAGAGAAATCTTCTGATAAACCTGTAACAGAGACCCTGCAGAACTCTGACAAACCAGTCACTTCGGATTCAGAAACTGCAAAGTCTGCTAAGGTTAATAAGATAATTATTCCCAAAAAAGTGAAACCAGATGATACACAGGCTGAATCTCGTAAGCATGCTGTTGTTATAAGGCCTCCTACTGAATCAAGTAGAGGGCTTCCTGCCGATTCAGGTAGAGGACCTCCTACTGATACAGGCAGAGGTCAGGTTGATTATCACAAGTTACCAATTAAAATACGACCACCAACAGAGGAGCAAAGTCACAAAAGGATTGTTATAAGACGTACGAAGGAGGTTATTGATTTAGAACTGGATAGTCCTGGTGGAAACACTGGACTTCAACACAGAAAGACAAAAAGAATTGTTGAATTGTCAAATTTTGAGAAACAAAAGAAACAGGAGACCGTGTATGGAACTGGAGCTTTTCCAAAATGGAACACTAAAGAGGACAGAAGATGGTGGGAAGAGCAAGAGAAACGAAGAAATGATGCAAGACTTCGAGAAGAAGACAGAGCAAGGAGGCATCACAAAGAAGAAATGAGGATGCTCAAAGAGCAAGAAAGGTTAGATGAAATAAAAAGATTTGAAGAAGATATCAGAAGAGAGAGGGAGGAAGAAGAACGGCAAAAGGCTAAGAAGAAAAAGAAGAAGAAAAAGCCTGATTTAAGAGATGAGTATTTAGATGATCCCAGAGCAAGAAGACATGATAAGAGAATGCCTGAAAGAGACAGGAGTGGAAAAAGGAGATCTGTTGCTGAGTTAGGAAAGCTTAGTGCAGATTATATGCCGCCAACAAAACGCCGAAGAGGGGGAGGGGGAGAGGTTGGTTTGGCAAATATCTTGGAGGGCATTGTGGAAACGATGGTTAAAGATAGGTACGAGCTATCTTATCTTTTCGTGAAACCAGTGTCGAAGAAAGAGGCTCCTGACTACCTGGACATTATAGATACGCCTATGGATCTTTCCAGAATCAGGGAGAGAGTACGGAACATGGAGTACAAGAGCCGAGAAGATTTCAGGCATGACGTTTGGCAGATTACTTTTAATGCACACAAATACAACGACGGTAGAAATCCTGGAATTCCTCCCCTTGCAGATATGCTTTTGGAATATTGTGATTATTTGTTGAATGAGAATGATGATAGCCTCACTTCAGCAGAAGCTGGCATTGAAACTAGAGATTCCTAA 5709 0.4127 MGYDSASPSQDGRDEDDEEEYEESGKGNRFLGFMFGNVDNSGDLDVDYLDEDAKEHLSALADKLGPSLTDIDLSGKSPQTPPDVVEQDCDEKAEDAVDYEDIDEEYDGPETEAANEEDYLLPKKEFFSAEASVCMESKASVFDDENYDEESEKEQDFLNEDSKPDNISLLEEQEETLVEASKEESALERELHVDSLQSEELDADVQKPEEEGTEVQKRSMAMPLPVLCVEDGVAILRFSEIFGIHEPLRKGEKREHRQPITRDRYKSLDFTDDFVEEDEEEFLKGSSQSLSQTKQVSVVHNDVSESNDVDLEFPKFGFLHTEPSVARKDDHQSKDSCHSAEPMKGDFEEDLSWKDHPFIWTNFYPLDQQDWEDEIIWGNSPVQSNNNIESCEVSGPELGVSGGSEIEIESGIQNIQLEPHKILEDKDHNVLLSSPVSLEAFGSRDSSEAKTNLISRSLFHPQLLRLESRSEVDSSILADGKEGEISKHNQSGQITRFSKAISKNRDMMEGSWLDEIIWEEVDQPVVKPKLIFDLQDDQMHFEVLDSKDGAHLRLHAGAIILTRSSKSSSGDSSEVPGHGSQYGWRYVSNDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHRPKALWYPHDNEVAVKEQGKLPTQGPMKIIIKSLGGKGSKLHVDTDETLSTVKAKASKKLDFKASETVKIFYLGRELEDQKSLAEQNVQPNSLIHLVRSKIHLWPKAQRVPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNVGMGARLCTYYQKCSPDDQSGSLLRNTDSSLGHVISLDPADKSPFLGDLKPGCCQSSLETNMYRAPVFPHKVPLTDYLLVRSPKGKLSLRRIDKINVVGQQEPLMEVFSPGSKNLQTYMMNRLLVHMCREFQAAEKRHLPPHIRVDEFLSQFPYQSEASFRKKIKEYANLQRGANGQSILVKKRNFRIWSEDELRKMVLPELVCAYESMQAGLYRLKHLGITETHPTNISSAMNRLPDEAIALAAASHIERELQITPWNLSSNFVACTSQGKENIERMEITGVGDPSGRGMGFSYARAPPKAPVSSAMVKKKAAANRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVNADENESDSEGNSDLDSFAGDLENLLDAEEFEEGEEGTNDLKRDKGDGVKGLKMRRRSTLAQAEEEIEDEAAEAAELCRLLMDDDEADRKKKKKTKVTGEETRLVSKMQSKFAFDNAEQVKQITNSLQLDGNIPLKEDTITDLREEENFGAKKSKSLKVNKAKKNDIAPISLPNKKIKLNMGEGIKNQVFKEKKPSRETFVCGACGQPGHMRTNKNCPKYGEDLETQLESADMEKSSGKPISVDPSSHSQSKTASKKSSSKSNSKITPVDNSAKIPLKFKCGSTEKSSDKPVTETLQNSDKPVTSDSETAKSAKVNKIIIPKKVKPDDTQAESRKHAVVIRPPTESSRGLPADSGRGPPTDTGRGQVDYHKLPIKIRPPTEEQSHKRIVIRRTKEVIDLELDSPGGNTGLQHRKTKRIVELSNFEKQKKQETVYGTGAFPKWNTKEDRRWWEEQEKRRNDARLREEDRARRHHKEEMRMLKEQERLDEIKRFEEDIRREREEEERQKAKKKKKKKKPDLRDEYLDDPRARRHDKRMPERDRSGKRRSVAELGKLSADYMPPTKRRRGGGGEVGLANILEGIVETMVKDRYELSYLFVKPVSKKEAPDYLDIIDTPMDLSRIRERVRNMEYKSREDFRHDVWQITFNAHKYNDGRNPGIPPLADMLLEYCDYLLNENDDSLTSAEAGIETRDS 1902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2260g00002 1902 Coils Coil 1263 1290 - -
Vium2260g00002 1902 ProSiteProfiles Ubiquitin domain profile. 668 738 IPR000626 GO:0005515
Vium2260g00002 1902 Coils Coil 170 190 - -
Vium2260g00002 1902 MobiDBLite consensus disorder prediction 1246 1261 - -
Vium2260g00002 1902 MobiDBLite consensus disorder prediction 1 29 - -
Vium2260g00002 1902 MobiDBLite consensus disorder prediction 1578 1599 - -
Vium2260g00002 1902 MobiDBLite consensus disorder prediction 1241 1261 - -
Vium2260g00002 1902 SUPERFAMILY Ubiquitin-like 638 738 IPR029071 -
Vium2260g00002 1902 MobiDBLite consensus disorder prediction 1530 1551 - -
Vium2260g00002 1902 MobiDBLite consensus disorder prediction 140 217 - -
Vium2260g00002 1902 SUPERFAMILY Bromodomain 1768 1890 IPR036427 GO:0005515
Vium2260g00002 1902 SUPERFAMILY TAF(II)230 TBP-binding fragment 24 62 IPR036741 -
Vium2260g00002 1902 CDD Ubl_TAFs_like 668 739 - -
Vium2260g00002 1902 ProSitePatterns Bromodomain signature. 1803 1860 IPR018359 -
Vium2260g00002 1902 FunFam Transcription initiation factor TFIID subunit 1 650 740 - -
Vium2260g00002 1902 MobiDBLite consensus disorder prediction 1450 1480 - -
Vium2260g00002 1902 PRINTS Bromodomain signature 1801 1814 IPR001487 GO:0005515
Vium2260g00002 1902 PRINTS Bromodomain signature 1849 1868 IPR001487 GO:0005515
Vium2260g00002 1902 PRINTS Bromodomain signature 1815 1831 IPR001487 GO:0005515
Vium2260g00002 1902 PRINTS Bromodomain signature 1831 1849 IPR001487 GO:0005515
Vium2260g00002 1902 Pfam TATA box-binding protein binding 18 61 IPR009067 -
Vium2260g00002 1902 MobiDBLite consensus disorder prediction 1663 1694 - -
Vium2260g00002 1902 MobiDBLite consensus disorder prediction 66 91 - -
Vium2260g00002 1902 Gene3D - 650 740 - -
Vium2260g00002 1902 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 13 1901 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Vium2260g00002 1902 MobiDBLite consensus disorder prediction 1727 1761 - -
Vium2260g00002 1902 Pfam Bromodomain 1789 1864 IPR001487 GO:0005515
Vium2260g00002 1902 MobiDBLite consensus disorder prediction 1413 1599 - -
Vium2260g00002 1902 MobiDBLite consensus disorder prediction 156 216 - -
Vium2260g00002 1902 SMART bromo_6 1777 1888 IPR001487 GO:0005515
Vium2260g00002 1902 Coils Coil 1673 1726 - -
Vium2260g00002 1902 SMART ubq_7 668 740 IPR000626 GO:0005515
Vium2260g00002 1902 Gene3D - 22 68 IPR036741 -
Vium2260g00002 1902 MobiDBLite consensus disorder prediction 594 613 - -
Vium2260g00002 1902 Pfam Protein of unknown function (DUF3591) 587 1154 IPR022591 -
Vium2260g00002 1902 MobiDBLite consensus disorder prediction 1706 1763 - -
Vium2260g00002 1902 Pfam Ubiquitin family 670 741 IPR000626 GO:0005515
Vium2260g00002 1902 MobiDBLite consensus disorder prediction 1496 1522 - -
Vium2260g00002 1902 Gene3D - 1773 1902 IPR036427 GO:0005515
Vium2260g00002 1902 ProSiteProfiles Bromodomain profile. 1798 1868 IPR001487 GO:0005515
Vium2260g00002 1902 CDD Bromodomain 1787 1883 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2260g00002 Vium-Chr2260 12659 36122 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2260g00002 668 738 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 36.620 7.64e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2260g00002 K03125 - gmx:100780733 3190.98