Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium225g00012 ATGGATTCCACTCTCTCTTTCCACACTCCAACTAACAATGCCATCTCACAACCGGAACAACCGCCTCCTCCACCGCCTCCGCCGCCGCCTCCTAACTCACATTCGCCACCCGCACTCTTAGTTCCCAAACCCGAACCCTTCTGGGCCTCTGACCATGACGATATCGGAGACGAACTCGACCTATTCACTGAGTTCAACCGAGTTACCGAGTTGTTCCACCTTGCCTTCGGAGCCACCAATGTCGTCCTTCCCCCCTACTCCTTCGGACCTCAACCTGCTTCACCCACATGCTCCGACCCCCTTCCTGCTGCGGATGTCCATTCGGCGGTTCAGGAACACCCGAATTCGTCGTCCTCCACCAGCGACGCCTCGAGAGCGATCGTCCCCGTGGAGGACCTCACGGTGAGCGTTGCGCCGCCGCGGAAGCAGAGCCGGCAGAAGGAGCTGGTTCGGGTAATGGGTCTGTCGGTGAGGGAACAGGCGCAGCTGCGGGAGACGGTGAGGCGCACGCGCTTGGTGTACGACTCGGTGCGCGTGTATACCGCTGTGGAGGAGGAGAGGCGGGTGGCTGCCTTGGCGGCTGCGGCAGCGGCGAGGGAGGCGGCAAGGGAGGCGGCAAGGGAGGCGGAGATCAAGGAGGAGCAGGAAGAGGAGAAAGTGGTGGAGGGCCGGACTCGACGTCTCCGCGGGGACCTGCGAGCTGCTGGACTGATGCGGGAGCGTGGACTGTGGCTGAACCGGGAGAAGCGAATCGTTGGGGCGATCCCTGGGATTTTGGTGGGGGATTTGTTCCTTTTCAGGATGGAGTTGTGTGTGCTTGGGTTGCACGGTCAGATACAGGCTGGCATTGATTATCTTCCTGCAAGTATGAGCTCCAGTGGGGAGCCTATAGCCACCAGTGTGATTGTTTCTGGGGGTTACGAGGATGATTCTGATAAGGGTGAGCATATATTCTACACTGGTCATGGAGGGCAGGGGAAGAATTCGTCTAAGCAGGTTGCTGATCAGAAGTTGGAGTCAGGGAACCTTGCATTGGAAAGGAGTATGCATTACGGTGTGGAGGTGAGGGTTATTCGTGGGATGAGGTATGAGGGGAGTGCTTCTGCTTCTGGTAAGGTGTATGTGTATGATGGAGTGTATAAGATTACTCAGTGCTTGTTTGATAAGGGGAGGTCTGGTTTTGGGGTTTACAAGTTTAGGCTTTCCAGGGTTGCGGGGCAGGCTAAGATGGGAAGTACTATTTTGAAGGAAGCTAGGAGTATTAGGAGGAATGAAATGGAATCGAATACTGTTCGTTGTCTTTCTGCTGATATGTCCAACAAGAAGGAGAATGTTCCTGTTCGCCTTTTTAACGACATAGATGATGATCGAGATCCTCTTAACTATGAGTATCTTGCCAGGACAAGTTTTCCACAGTTTGTGTTTCATCAGAGTGGGAATGTTACTGGTTGTGACTGTGTGAATGGTTGTGGTGATGGATGCTTTTGTGCTATGAAAAATGGGGGTGATTTTCCTTACACTCTGCAGGGACATCTTGTGAAAGGGAAGCCTTTGATTTTTGAATGTGGCCCTTTTTGTTCTTGTCCTTCTCAGTGTCGTAATCGTGTTTCGCAGAAGGGAGTGAAATATAGGTTGGAAGTGTTTAGGTCCCTGCAGACATCTTGGGGTGTTAGGTCTCTGGACCTTATTCAAGCCGGTACTTTTATATGCGAGTTTTCTGGGGTTGTTTTGACTAGGGAGCAGGCGCAACTCTTTGCAATGAATGGTGACTCTTCGATATATCCCAATAGGTTTTCAGAAAGATGGGCGGAATGGGGGGATTTGTCTCAAGTAGATCCAAAATATGTGCGTCCATCATATCCATCTATTCCTCCTTTAGATTTTTCTCTGGATGTGTCGACTATGAGGAATGTTGCTTGTTATATGAGCCATAGTTCATCTCCAAATGTTTTGGTTCAGTTTGTTCTGTATGATCACAACAATTTGATGTTCCCACACCTTATGCTATTTGCAATGGAGAATATCCCTCCCATGAGAGAGCTCAGCCTTGATTACGGCGTAGCTGATGAGTGGACAGGGAAGCTCTCTATATGTAACTGA 2100 0.5114 MDSTLSFHTPTNNAISQPEQPPPPPPPPPPPNSHSPPALLVPKPEPFWASDHDDIGDELDLFTEFNRVTELFHLAFGATNVVLPPYSFGPQPASPTCSDPLPAADVHSAVQEHPNSSSSTSDASRAIVPVEDLTVSVAPPRKQSRQKELVRVMGLSVREQAQLRETVRRTRLVYDSVRVYTAVEEERRVAALAAAAAAREAAREAAREAEIKEEQEEEKVVEGRTRRLRGDLRAAGLMRERGLWLNREKRIVGAIPGILVGDLFLFRMELCVLGLHGQIQAGIDYLPASMSSSGEPIATSVIVSGGYEDDSDKGEHIFYTGHGGQGKNSSKQVADQKLESGNLALERSMHYGVEVRVIRGMRYEGSASASGKVYVYDGVYKITQCLFDKGRSGFGVYKFRLSRVAGQAKMGSTILKEARSIRRNEMESNTVRCLSADMSNKKENVPVRLFNDIDDDRDPLNYEYLARTSFPQFVFHQSGNVTGCDCVNGCGDGCFCAMKNGGDFPYTLQGHLVKGKPLIFECGPFCSCPSQCRNRVSQKGVKYRLEVFRSLQTSWGVRSLDLIQAGTFICEFSGVVLTREQAQLFAMNGDSSIYPNRFSERWAEWGDLSQVDPKYVRPSYPSIPPLDFSLDVSTMRNVACYMSHSSSPNVLVQFVLYDHNNLMFPHLMLFAMENIPPMRELSLDYGVADEWTGKLSICN 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium225g00012 699 SMART G9a_1 248 407 IPR003105 -
Vium225g00012 699 MobiDBLite consensus disorder prediction 1 15 - -
Vium225g00012 699 Gene3D - 250 412 IPR036987 -
Vium225g00012 699 ProSiteProfiles Pre-SET domain profile. 482 540 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium225g00012 699 SMART set_7 543 692 IPR001214 GO:0005515
Vium225g00012 699 Pfam Pre-SET motif 438 535 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium225g00012 699 ProSiteProfiles SET domain profile. 543 686 IPR001214 GO:0005515
Vium225g00012 699 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 66 699 IPR025794 GO:0016571
Vium225g00012 699 MobiDBLite consensus disorder prediction 1 51 - -
Vium225g00012 699 Pfam SAD/SRA domain 252 407 IPR003105 -
Vium225g00012 699 SUPERFAMILY PUA domain-like 234 421 IPR015947 -
Vium225g00012 699 Gene3D SET domain 413 699 IPR046341 -
Vium225g00012 699 MobiDBLite consensus disorder prediction 16 43 - -
Vium225g00012 699 ProSiteProfiles YDG domain profile. 253 403 IPR003105 -
Vium225g00012 699 SUPERFAMILY SET domain 444 697 IPR046341 -
Vium225g00012 699 Coils Coil 192 219 - -
Vium225g00012 699 Pfam SET domain 555 686 IPR001214 GO:0005515
Vium225g00012 699 SUPERFAMILY Formin homology 2 domain (FH2 domain) 21 72 - -
Vium225g00012 699 SMART preset_2 435 527 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium225g00012 699 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 108 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium225g00012 Vium-Chr225 94307 113105 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium225g00012 114 688 Su(var)3-9 homologs AT5G04940 37.288 2.18e-104 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium225g00012 SAD_SRA 1.7e-46 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium225g00012 K11420 - gmx:100785015 961.059