Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium225g00003 ATGTTTCTGGAGCTAGCGATGCATTGTGCATCTGTTATTTGTTGTCGCTCATCCCCAAAGCAGAAGGCACTGGTTACTAGATTGGTTAAATCTGGAACTGGGAAAACAACCTTAGCCATTGGGGATGGAGCTAACGATGTGGGAATGCTTCAAGAAGCAGATATAGGGGTTGGTATAAGTGGTGTTGAAGGAATGCAGGCAGTTATGTCTAGTGATATTGCAATTGCACAATTCCGGTATTTGGAACGGTTACTCCTGGTTCACGGACATTGGTGTTACAGAAGGATCTCGTCTATGATATGCTACTTTTTCTACAAGAATATCACATTTGGTTTCACTCTATTCTTGTATGAGGTGTATGCATCATTCTCTGGACAACCAGCTTACAATGACTGGTTTTTGTCTCTGTATAATGTCTTCTTTTCATCACTTCCTGTGGTTGCACTTGGGGTGTTTGACCAGGATGTATCCGCTCGGTACTGCCTGAAGTTTCCTTTGTTATATCAAGAAGGAGTACAGAATGTTCTGTTCAGCTGGCGTAGAATACTCAGCTGGATGCTTAATGGATTTATCAGTGCCTTAATAATTTTCTTCTTCTGCACAAAAGCGATGGAGCTCCAGGCCTTCGATGCAGAAGGTAGAACTGCTGGAAAGGATATACTGGGAGTAACAATGTACACCTGTATAGTTTGGGTTGTAAACTTGCAAATGGCACTAGCGATAAGTTATTTCACCTTGATCCAACATTTTTTCATCTGGGGTTCCATTCTTTTCTGGTATATTTTTCTCATGGTATATGGAGCAATACCCCCACACTTTAGTAAAGATGCTTACAAAGTCTTCATTGAAGCTCTTGCTCCATCCCCTTCCTATTGGCTTGTGACATTCTTTGTGGTTATCTCAACCCTTATACCATACTTCTCTTACGCAGCAATTCAGATGCGGTTCTTTCCCATGTACCATGAACTAGTACAATGGATAAGGTATGAAGGGAAGATTAAGGATCCTGAGTTTTGTGATATGGTGCGGCAGAGATCATTGCGGCCAACAACAGTGGGTTCAACAGCACGTTTGGCTGCTAAGGCTCACAACGTTAGAGACAGAAATGTTAAACGGTAG 1119 0.4209 MFLELAMHCASVICCRSSPKQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNITFGFTLFLYEVYASFSGQPAYNDWFLSLYNVFFSSLPVVALGVFDQDVSARYCLKFPLLYQEGVQNVLFSWRRILSWMLNGFISALIIFFFCTKAMELQAFDAEGRTAGKDILGVTMYTCIVWVVNLQMALAISYFTLIQHFFIWGSILFWYIFLMVYGAIPPHFSKDAYKVFIEALAPSPSYWLVTFFVVISTLIPYFSYAAIQMRFFPMYHELVQWIRYEGKIKDPEFCDMVRQRSLRPTTVGSTARLAAKAHNVRDRNVKR 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium225g00003 372 SUPERFAMILY Calcium ATPase, transmembrane domain M 89 318 IPR023298 -
Vium225g00003 372 Pfam Phospholipid-translocating P-type ATPase C-terminal 68 318 IPR032630 -
Vium225g00003 372 SUPERFAMILY HAD-like 3 95 IPR036412 -
Vium225g00003 372 Gene3D - 1 80 IPR023214 -
Vium225g00003 372 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 2 329 - -
Vium225g00003 372 NCBIfam HAD-IC family P-type ATPase 12 123 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium225g00003 Vium-Chr225 12968 15144 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium225g00003 1 360 Primary Pumps ATPases AT3G25610 80.833 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium225g00003 K01530 - gmx:100781421 707.212