Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2252g00001 ATGGGGAGGAAGGGAAGTTGGTTTTCTACTGTGAAGAAAGCTCTGAGCCCTGAATCAAAGGAGAGGAACTATCAGAAAACAAGTAGACCAAAGAAGAAATGGTTTGGAAAACAAAAGTTGCAGACTTCAGCGTCACAATCCGAAACTGATAAAGCACCTCCTCTTCCTCCACCCGAGGTTATTTTACCTCACTCTGAGATTGAAACCAGTCATGATGACGTCAAAGTTGAAACTGCAGTTGTTGCCGAGGAACCTGTTCCTGCTGTTCAGACAGAACCTGTGGATGTCCAAGCCACTACAATTGTTCAGTTACACAGTAAACCAACAGAAGAAGTGGCAGCAATAAGGATTCAGAAAGCTTTTCGGGGATACTTGGCAAGAAGGGCATTGCGGGCTTTGAGGGGACTGGTGAGGTTGAGATCACTCATGGAAGGGCCAGTGGTGAAACGTCAAGCTATTAGTACCCTCCGTTCTATGCAGACTTTTGCACATTTGCAAACTCAGATTCGTTATAGGAGGCTCAGGATGTTGGAGGAGAATCAAGCTCTACAGAAACAGCTCTTACAGAAACATGCAAAAGAGTTAGAGAGCATGAGGCTTGGTGAGGAATGGGATGACAGTGTACAATCGAAAGAACAGGTTGAAGCCAAGTTACTGAGCAAGTATGAAGCTGCTATGAGAAGAGAAAGAGCAATGGCTTATTCATTCTCTCATCAGCAAAACTGGAAGAATTCATCAAGATCCATAAACCCAATGTTCATGGATCCAACCAATCCAACCTGGGGTTGGAGTTGGTTGGAGCGATGGACGGCAGCCCGGCCCTGGGAGAGCCATAGCTTGGTGGAGAAAGAGAAGAATGACAATAAATCTATTAGAAGTTCTGGCCGTGGCATTACCAGTGCTGAAATCAGCAAATCATTTGCTAAGTTTCAGCTCAATTCTGAGAAGTATTCTCCAACAGCGAGCCAAAATCCAGGCTCACCTAACGTTGAGTCACATTCCCAGCAATCGCATTCAAATCCTCCCAAGTCAGCTTCTCCAGCAGCTGCTAAGAAGCTGAAGAAAGTGAGTCCAAAGGACATCATGGCTATAGATGATGAGACCAAAAGTGTGATGAGTGTGCAGTCAGAGCGGGCAAGGAGGCACTCCATTGGTGGATCAACAGTGGGAGATGATGAAAGCCTTGCAAGCTCCCCAGCAATTCCAAGTTACATGGTGCCAACTAAATCTGCCAAAGCCAAGTCCAGAATGCAAAGCCCACTAGCTGCAGAAAATGTGACCCCAAATAAAGGGTCCCCTGCTGGGACTGCAAAAAAACGTCTTAGTTTCCCTGCTTCACCTGCTAGACCAAGAAGGCATTCAGGTCCACCAAAGGTAGAAATCAGCTTCAATGCTGAAATCGCTGTGGGAAATGGTGTGTCTGGCTGA 1428 0.4622 MGRKGSWFSTVKKALSPESKERNYQKTSRPKKKWFGKQKLQTSASQSETDKAPPLPPPEVILPHSEIETSHDDVKVETAVVAEEPVPAVQTEPVDVQATTIVQLHSKPTEEVAAIRIQKAFRGYLARRALRALRGLVRLRSLMEGPVVKRQAISTLRSMQTFAHLQTQIRYRRLRMLEENQALQKQLLQKHAKELESMRLGEEWDDSVQSKEQVEAKLLSKYEAAMRRERAMAYSFSHQQNWKNSSRSINPMFMDPTNPTWGWSWLERWTAARPWESHSLVEKEKNDNKSIRSSGRGITSAEISKSFAKFQLNSEKYSPTASQNPGSPNVESHSQQSHSNPPKSASPAAAKKLKKVSPKDIMAIDDETKSVMSVQSERARRHSIGGSTVGDDESLASSPAIPSYMVPTKSAKAKSRMQSPLAAENVTPNKGSPAGTAKKRLSFPASPARPRRHSGPPKVEISFNAEIAVGNGVSG 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2252g00001 475 MobiDBLite consensus disorder prediction 1 59 - -
Vium2252g00001 475 Gene3D iswi atpase 107 134 - -
Vium2252g00001 475 PANTHER IQ-DOMAIN 5-RELATED 1 456 - -
Vium2252g00001 475 Pfam IQ calmodulin-binding motif 113 131 IPR000048 GO:0005515
Vium2252g00001 475 ProSiteProfiles IQ motif profile. 110 138 IPR000048 GO:0005515
Vium2252g00001 475 MobiDBLite consensus disorder prediction 315 461 - -
Vium2252g00001 475 MobiDBLite consensus disorder prediction 353 376 - -
Vium2252g00001 475 MobiDBLite consensus disorder prediction 412 432 - -
Vium2252g00001 475 MobiDBLite consensus disorder prediction 315 344 - -
Vium2252g00001 475 SMART iq_5 109 131 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2252g00001 Vium-Chr2252 11581 15478 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2252g00001 1 473 IQD Protein Family AT5G03040 50.207 3.13e-141 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2252g00001 - - vun:114191598 782.711