Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2251g00001 ATGTTGGATTACGAATGGAACTCATCAATGATACTCCTCGCCGGAAATGAACTCACCGCCGGCGAACCCGACCAAACGCGCCGGCAAATTTTCGACCACAACTTTGCCATGTTAACTGACCCCATTCTACATGGCTCAACACCAACACCCACCACTGCTTTCTCGATTCACCACCCCTTCAACCCACCACCACAACAGCAGCACCACCATCACAACCCCCAGCAGCACTTCTTCGACCCACGCGCCTTCCAAAGCGCGTCCTCCGCTTCCTTCTCGCCACCACCTTCGGTGCTCTCACTTAACCCAATCCCACCTCTAGCTCGCTCCCACTGTGGACTTGGGCCTGGCTCCGGGCTTGGGTTTCTGCTCATGTCCAAGTCTGAGGATGTGACTTCGCCCGTTAACTTTGAGTGCTCTGGTCATGGTTTCGGGCCTGGACCCGGGCTTGGACTCAACCTCGGTGGTCGCACTTATTTTGCCGCTTCCAACGAAGACACCCTGGACAGATTCTACCGTTGCAAGACGGTGGAATCGGTTTCCACCGTGGCGTCAAATTTGCCACGCTGTCAAGCAGAAGGTTGTAACACGGACCTCTCCGAAGCCAAGCACTACCACCGCCGCCACAAGGTGTGTGAGTTCCACTCCAAGGCCGCCACCGTCATTGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAGTGCAGCAGATTCCATCTTCTTTCAGAATTTGACAATGGGAAACGGAGCTGCAGGAAGAGACTGGCAGATCACAATCGTCGCAGAAGAAAAACTCAGCAGGCAACTCAAGACATTCACAAATCTCAGCCTTCTTTGGACAATGTTACATGGTCCTCTTCTGAATCTGGAGCTCAATCTTCGTCATCAATGAAGGTGGCAGTGTCACCCCCAGATTATTTTCAGCAAAATAGAGGCACTTCGTCAACATCATCATCTGGGTCATTGTTTTTCTCAAGTGGGGCCAATTTGCATGGCTAA 993 0.5297 MLDYEWNSSMILLAGNELTAGEPDQTRRQIFDHNFAMLTDPILHGSTPTPTTAFSIHHPFNPPPQQQHHHHNPQQHFFDPRAFQSASSASFSPPPSVLSLNPIPPLARSHCGLGPGSGLGFLLMSKSEDVTSPVNFECSGHGFGPGPGLGLNLGGRTYFAASNEDTLDRFYRCKTVESVSTVASNLPRCQAEGCNTDLSEAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQATQDIHKSQPSLDNVTWSSSESGAQSSSSMKVAVSPPDYFQQNRGTSSTSSSGSLFFSSGANLHG 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2251g00001 330 MobiDBLite consensus disorder prediction 253 330 - -
Vium2251g00001 330 MobiDBLite consensus disorder prediction 55 71 - -
Vium2251g00001 330 Gene3D - 184 250 IPR036893 GO:0003677|GO:0005634
Vium2251g00001 330 SUPERFAMILY SBT domain 187 266 IPR036893 GO:0003677|GO:0005634
Vium2251g00001 330 MobiDBLite consensus disorder prediction 55 75 - -
Vium2251g00001 330 MobiDBLite consensus disorder prediction 268 330 - -
Vium2251g00001 330 ProSiteProfiles Zinc finger SBP-type profile. 186 263 IPR004333 GO:0003677
Vium2251g00001 330 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 181 316 IPR044817 GO:0003677
Vium2251g00001 330 Pfam SBP domain 189 262 IPR004333 GO:0003677
Vium2251g00001 330 FunFam Squamosa promoter-binding-like protein 14 180 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2251g00001 Vium-Chr2251 38998 41784 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2251g00001 1 236 SBP-box Gene Family AT1G02065 39.286 4.06e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium2251g00001 SBP 6.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2251g00001 - - var:108328505 553.518