Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2249g00004 ACCCTAGTTTATATTAGTTTCTCTGTGTTTGTGCCCCTGCTGCTTATCACCGTCACGAGGGAGAGAGAGTGTGCGTGTGGCCGAGGGAGAGAGAGAGAAGCGAAAATGAGCGGAGCAAAGGGGAAGAAGAAGGGAGCTAGCTTCGTGATCGATTGCGCGAAGCCTGTTGAGGACAAGATTATGGACATTGCTTCTCTCGAGAAGTTTCTTCAAGAGAGGATTAAGGTCGGCGGCAAGGCCGGTGCACTCGGCGATTCCGTTACTGTCACACGGGAGAAGAGCAAGATCACCGTTACCTCTGACAGCAACTTCTCTAAAAGGTATCTGAAATATTTGACCAAGAAGTACTTGAAAAAGCACAATGTGAGGGATTGGCTTCGGGTGATTGCATCCAACAAGGACAGGAATGTCTATGAGTTGAGATATTTCAACATTGCTGAGAATGAGGGTGAAGAGGAAGACTGA 465 0.4796 TLVYISFSVFVPLLLITVTRERECACGRGREREAKMSGAKGKKKGASFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2249g00004 154 Pfam Ribosomal L22e protein family 44 152 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vium2249g00004 154 FunFam 60S ribosomal protein L22-2 35 154 - -
Vium2249g00004 154 PANTHER 60S RIBOSOMAL PROTEIN L22 33 154 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vium2249g00004 154 Gene3D - 35 154 IPR038526 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2249g00004 Vium-Chr2249 34840 36333 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2249g00004 39 154 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 90.517 9.31e-65 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2249g00004 K02891 - pop:7487786 217.624