Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2249g00001 ATGATTCCCTTGTCCAGCATCCTGGGGTACGAAAAGTGTGACAGATACTTAATTTTTAGTGGAGAATCTGCCCTTGGGGATGGTTTTCGAGCATTTTTGTATTTTCTTGGCCTTGCTTACTGCTTTATCGGATTGTCGGCTATAACCGCTCGCTTCTTTCAATCGATGGAAAATGTGGTCAAGCACACAAGGAAGGTAGTGGAGGTAGATCCTGTTACTAAAACTGAAACCATTAGACATGAAAAAGTTTGGAATTACACTGTTGCAGATATTAGCCTCTTGGCCTTTGGGACTAGCTTTCCCCAGATATCATTAGCCACCATTGATGCTATACAGAACATGGGGAAGCTCTATGCTGGAGGTTTGGGGCCCGGAACACTTGTTGGTTCTGCTGCATTTGATCTTTTCCCCATCCACGCCATTTGTGTAGTAGTTCCAAAAGCAGGAGAGCTGAAGAAGATTGCTGATCTAGGGGTATGGCTGGTGGAGCTGTTTTGGTCATTTTGGGCTTACATTTGGTTATACATAATTTTGGAGGTATGGACTCCAAACGTTGTGACTCTGTGGGAGGCCTTGTTGACAGTACTACAATATGGATTACTATTGATCCATGCTTATGCTCAAGATAAACGTTGGCCCTATATTTCTCTACCCATTGCAAGAGATGAGAGGCCAGAGGATTGGGTACCAGAGGAGACTCCTTATTTTCAACAGGAAGTCTATCAGAAGATGAATTCCTCTGAGATAAAGCATGTTAGTGATGAAAATCGCAACACTGTTGATAGTTTTTCCATTCATTCAGAAAACCCCACTGATCCATTGTGTGTCACAGTACCTCAAACAGATGATGAGGCTGAAATTTTGGACAAAGCTAAGGAAACAACGTTGGAGGATACCCACTTGCTTACAATTTGGAGACAGCAATTTGTGGATGCACTGAGGTTGAAGAACCCAGAAGCAAAAAAATTAAAAAATACGTATCTCCTCCTAGCTCGAATTTTCTGGCAATTGCTGCTTTTACCATGGAGATTTCTTTTTGCTTTTGTTCCTCCTTGCCAAATTGCTCATGGATGGATCTCCTTCATTTGCTCCCTGCTTTTCATCAGCGGGATAGCTTACATTGTGACTAAGATCACAGAACTTATAAGTTGTGTTACAGGAATAAATGGTTACGTGATAGCATTTACAGCCCTAGCCAGTGGAACCTCGTGGCCTGATCTAGTGGCAAGCAAGATTGCTGCTGAACGTCAAAAAACTGCTGATTCTGCAATTGCAAATATCACTTGCAGCAACTCAGTGAATATATATGTTGGAATTGGTGTTCCATGGCTTATTGATACTTTGTACAACTTCATAGCATATCGAGAACCTCTCAGAATCCAAAGTGCAGGGGGATTAAGCTTTTCACTGATTGTTTTCTTTTGCACTTCTGTTGGGTGTATATCAGTTTTGGTTTTCAGGCGTATAATTTTTGGAGCAGAGCTAGGAGGGCCTAGGCTCTGGGCATGGATTACGTGTGCGTTCTTCATGTTGTTGTGGATTATCTTTGTTGTACTATCTTCACTCAAGGTTTCTGGATTCATTTAG 1587 0.4197 MIPLSSILGYEKCDRYLIFSGESALGDGFRAFLYFLGLAYCFIGLSAITARFFQSMENVVKHTRKVVEVDPVTKTETIRHEKVWNYTVADISLLAFGTSFPQISLATIDAIQNMGKLYAGGLGPGTLVGSAAFDLFPIHAICVVVPKAGELKKIADLGVWLVELFWSFWAYIWLYIILEVWTPNVVTLWEALLTVLQYGLLLIHAYAQDKRWPYISLPIARDERPEDWVPEETPYFQQEVYQKMNSSEIKHVSDENRNTVDSFSIHSENPTDPLCVTVPQTDDEAEILDKAKETTLEDTHLLTIWRQQFVDALRLKNPEAKKLKNTYLLLARIFWQLLLLPWRFLFAFVPPCQIAHGWISFICSLLFISGIAYIVTKITELISCVTGINGYVIAFTALASGTSWPDLVASKIAAERQKTADSAIANITCSNSVNIYVGIGVPWLIDTLYNFIAYREPLRIQSAGGLSFSLIVFFCTSVGCISVLVFRRIIFGAELGGPRLWAWITCAFFMLLWIIFVVLSSLKVSGFI 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2249g00001 528 PANTHER SODIUM/CALCIUM EXCHANGER 12 285 - -
Vium2249g00001 528 Pfam Sodium/calcium exchanger protein 357 520 IPR004837 GO:0016020|GO:0055085
Vium2249g00001 528 Pfam Sodium/calcium exchanger protein 34 206 IPR004837 GO:0016020|GO:0055085
Vium2249g00001 528 Gene3D - 311 522 IPR044880 -
Vium2249g00001 528 Gene3D - 86 220 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2249g00001 Vium-Chr2249 13713 19250 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2249g00001 5 528 Antiporters AT2G47600 71.321 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2249g00001 K03452 - gmx:100792839 970.304