Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2248g00003 ATGGATTCCACCTCCTTCTTCAATTCATCCTCTTCCGATTTCTCCTCCGAATCTTCCTCTCCGGAGGCCTTCTCCTGGGAGGGCTACCTCCCCTTCAACGAGAACGACCCGGAGGAGATGCTCCTCTACGGCATGATCGCCGGCGCCACCACAGTCGAGCGCGCCGCCGACCGAGCGGGCTCTGAGGAGAGTGAGGCGGTGCAGAAGGAGAAGTCCTACCGCGGAGTGCGGCGGCGCCCGTGGGGGAAGTTTGCGGCGGAGATTAGAGACTCCACACGGCACGGGATGAGGGTGTGGCTTGGGACATTCGACAGCGCGGAAGCGGCGGCTTTGGCTTACGACCAAGCAGCGTTTTCCATGCGTGGCCCCGCCGCGATTCTGAACTTCCCCGTTGATATCGTTAGAGAATCGCTCAGAGAGATGAACTACGCGGTGGACAGCAATGAAGAAGGATGCTCCCCTGTTGTCGCTCTCAAGAGGAAACACTCGTTGAGGAGGAAAATTGGTGTGAAGAAAAACAACAAACAGAGTAGCGTAGACAATGCGGTCGTGTTTGAAGACCTTGGTCCTGACTACTTGGAACAGTTGTTGATGTCCTCTGATCGTATTCCCTCCTCCTCCTGA 624 0.5689 MDSTSFFNSSSSDFSSESSSPEAFSWEGYLPFNENDPEEMLLYGMIAGATTVERAADRAGSEESEAVQKEKSYRGVRRRPWGKFAAEIRDSTRHGMRVWLGTFDSAEAAALAYDQAAFSMRGPAAILNFPVDIVRESLREMNYAVDSNEEGCSPVVALKRKHSLRRKIGVKKNNKQSSVDNAVVFEDLGPDYLEQLLMSSDRIPSSS 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2248g00003 207 FunFam Ethylene-responsive transcription factor 2 71 131 - -
Vium2248g00003 207 SUPERFAMILY DNA-binding domain 72 132 IPR016177 GO:0003677
Vium2248g00003 207 SMART rav1_2 72 136 IPR001471 GO:0003700|GO:0006355
Vium2248g00003 207 CDD AP2 71 132 IPR001471 GO:0003700|GO:0006355
Vium2248g00003 207 PANTHER DNA-BINDING DOMAIN 25 198 IPR044808 GO:0003700|GO:0009873
Vium2248g00003 207 MobiDBLite consensus disorder prediction 1 23 - -
Vium2248g00003 207 Pfam AP2 domain 72 122 IPR001471 GO:0003700|GO:0006355
Vium2248g00003 207 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Vium2248g00003 207 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Vium2248g00003 207 ProSiteProfiles AP2/ERF domain profile. 72 130 IPR001471 GO:0003700|GO:0006355
Vium2248g00003 207 Gene3D AP2/ERF domain 71 132 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2248g00003 Vium-Chr2248 34215 35458 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2248g00003 30 201 AP2-EREBP Transcription Factor Family AT3G23240 60.221 7.28e-70 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium2248g00003 AP2 5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2248g00003 K14516 - gmx:100790598 322.783