Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2238g00001 ATGCAGGAACTCATGATGAAGAGGCGGGCAGCTGCTCTTGCCGTTCCTACAAATGATATGGCTGTGCGAGCTCGGCTTCGACATCTTGGTGAGCCAATAACTCTGTTTGGTGAGAGAGAGATGGAGAGACGGGACAGGTTGCGGATGATTATGGCGAAGCTAGATGCAGAAGGTCAGCTGGAGAAGCTGATGAAAGCTCATGAGGATGAAGAGGCTGCGGCTTCTGCTCCAAAAGACGAGGCTGAGGAAGCACTGCAGTATCCTTTTTACACTGAAGGGTCAAAGGCTCTCCTGGATGCCAGAATTTATATTGCTAAATATTCTTTGGCAAGGGCAGCATTACGGATTCAACGTGCACAGAGAAGAAGGGATGATCCAGATGAAGATATGGATGCAGAGATAGATTGGGCATTGAGGCAGGCTGGGAATTTGAGTCTCGAATTCAGTGAAATTGGAGATGATCGGCCTCTTTCTGGTTGCTCCTTCTCAAGGGATGGAAAATGGCTTGCCACCTGTTCTCTGACTGGCGCTTCCAAGTTGTGGAACATGCCCAAAATAAAAAAACATTCCACCTTGAAGGGGCACACAGAACGTGCTACAGATGTTGCTTTTTCTCCTGTTCATGATCATTTAGCAACTGCCTCTGCTGATCGAACAGCAAAGTATTGGAATGATCAAGGATCACTTTTGAAGACATTTGAGGGTCATCTGGACCGTCTTGCCCGCATTGCCTTCCATCCATCAGGGAAGTACCTGGGAACTGCCAGTTTTGACAAGACATGGAGATTATGGGACATAGAAACAGGGGAGGAGTTGCTTCTTCAAGAAGGACATAGTAGAAGTGTGTATGGCCTGGCTTTCCACCGCGATGGATCATTAGCTGCATCTTGTGGACTAGACTCTCTGGCTCGTGTTTGGGACCTCCGAACTGGAAGAAGTATTCTTGCACTGGAAGGTCATGTCAAACCGGTTCTTGGCATCAGTTTTTCACCTAATGGATATCATCTAGCCACTGGTGGTGAAGACAACACGTGTCGGATTTGGGATTTGAGGAAGAAGAAATCCTTTTATACTATTCCTGCTCACTCGAATTTAATATCACAAGTTAAATTTGAACCACAAGAAGGTTACTTTTTGGTAACTGCTTCATATGACATGACTGCTAAGGTTTGGTCTGGCCGTGACTTTAAGCCTGTGAAGACACTATCTGGGCATGAAGCAAAAGTTACCTCTGTGGATGTTCTTGGAGATGGTGGCCACATTGTTACCGTCTCCCATGATCGCACCATAAAACTGTGGTCCAGCAATACGACTAACGAACAAGCAATGGATGTTGATTAA 1341 0.4623 MQELMMKRRAAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLDAEGQLEKLMKAHEDEEAAASAPKDEAEEALQYPFYTEGSKALLDARIYIAKYSLARAALRIQRAQRRRDDPDEDMDAEIDWALRQAGNLSLEFSEIGDDRPLSGCSFSRDGKWLATCSLTGASKLWNMPKIKKHSTLKGHTERATDVAFSPVHDHLATASADRTAKYWNDQGSLLKTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDIETGEELLLQEGHSRSVYGLAFHRDGSLAASCGLDSLARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSFYTIPAHSNLISQVKFEPQEGYFLVTASYDMTAKVWSGRDFKPVKTLSGHEAKVTSVDVLGDGGHIVTVSHDRTIKLWSSNTTNEQAMDVD 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2238g00001 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 275 312 - -
Vium2238g00001 446 Gene3D - 318 444 IPR015943 GO:0005515
Vium2238g00001 446 Coils Coil 53 73 - -
Vium2238g00001 446 ProSitePatterns Trp-Asp (WD) repeats signature. 252 266 IPR019775 -
Vium2238g00001 446 PRINTS G protein beta WD-40 repeat signature 252 266 IPR020472 -
Vium2238g00001 446 PRINTS G protein beta WD-40 repeat signature 336 350 IPR020472 -
Vium2238g00001 446 PRINTS G protein beta WD-40 repeat signature 211 225 IPR020472 -
Vium2238g00001 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 359 392 - -
Vium2238g00001 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 192 224 - -
Vium2238g00001 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 402 434 - -
Vium2238g00001 446 FunFam U4/U6 small nuclear ribonucleoprotein Prp4 360 436 - -
Vium2238g00001 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 233 270 - -
Vium2238g00001 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 317 351 - -
Vium2238g00001 446 ProSitePatterns Trp-Asp (WD) repeats signature. 294 308 IPR019775 -
Vium2238g00001 446 CDD WD40 156 434 - -
Vium2238g00001 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 402 443 IPR001680 GO:0005515
Vium2238g00001 446 SUPERFAMILY PRP4-like 2 55 IPR036285 -
Vium2238g00001 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 359 401 IPR001680 GO:0005515
Vium2238g00001 446 Pfam pre-mRNA processing factor 4 (PRP4) like 22 48 IPR014906 -
Vium2238g00001 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 317 358 IPR001680 GO:0005515
Vium2238g00001 446 PANTHER WD40 REPEAT PROTEIN 1 435 - -
Vium2238g00001 446 SMART pr04_2 17 70 IPR014906 -
Vium2238g00001 446 Gene3D - 1 62 IPR036285 -
Vium2238g00001 446 SMART WD40_4 185 224 IPR001680 GO:0005515
Vium2238g00001 446 SMART WD40_4 395 434 IPR001680 GO:0005515
Vium2238g00001 446 SMART WD40_4 226 265 IPR001680 GO:0005515
Vium2238g00001 446 SMART WD40_4 268 307 IPR001680 GO:0005515
Vium2238g00001 446 SMART WD40_4 141 182 IPR001680 GO:0005515
Vium2238g00001 446 SMART WD40_4 352 392 IPR001680 GO:0005515
Vium2238g00001 446 SMART WD40_4 310 349 IPR001680 GO:0005515
Vium2238g00001 446 Pfam WD domain, G-beta repeat 276 307 IPR001680 GO:0005515
Vium2238g00001 446 Pfam WD domain, G-beta repeat 190 224 IPR001680 GO:0005515
Vium2238g00001 446 Pfam WD domain, G-beta repeat 315 349 IPR001680 GO:0005515
Vium2238g00001 446 Pfam WD domain, G-beta repeat 397 434 IPR001680 GO:0005515
Vium2238g00001 446 Pfam WD domain, G-beta repeat 227 265 IPR001680 GO:0005515
Vium2238g00001 446 Pfam WD domain, G-beta repeat 356 392 IPR001680 GO:0005515
Vium2238g00001 446 Pfam WD domain, G-beta repeat 158 182 IPR001680 GO:0005515
Vium2238g00001 446 ProSitePatterns Trp-Asp (WD) repeats signature. 336 350 IPR019775 -
Vium2238g00001 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 192 224 IPR001680 GO:0005515
Vium2238g00001 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 233 274 IPR001680 GO:0005515
Vium2238g00001 446 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 132 316 - -
Vium2238g00001 446 SUPERFAMILY WD40 repeat-like 146 433 IPR036322 GO:0005515
Vium2238g00001 446 Gene3D - 132 317 IPR015943 GO:0005515
Vium2238g00001 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 275 316 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2238g00001 237 433 U-box Gene Family AT2G33340 22.172 3.52e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2238g00001 K12662 - gmx:100788948 835.099