Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2236g00001 ATGGCAGTCACATTCTACGACCTTAGTTCTACCTCTGGGTTGAAGAAGCTTGACGAGTACCTTCTCTCACGTAGTTACATCACAGGGTACCAAGCTTCAAAGGATGATCTCACTGTCTATGCAGCTTTGCCAACTGCTCCATCAGCAGAGTATGTGAATGTGTCCAGGTGGTACAAGCACATTGATGCTTTGTTGAGAATTTCTGGTGTTTCTGGTGAGGGATCTGGTGTCACTGTTGAGGGAACTCTTGTTGCCGAGCCTGTTGCAACTCCCCCAACTGCTGATACAAAGGCTGCTGCAGCTGAGGATGACGATGATGATGATGATGTCGATTTGTTTGGTGAAGAGACAGAAGAAGAAAAGAAGGCAGCTGAGGAACGGGCAGCTGCAGTGAAGGCATCTGGAAAAAAGAAAGAGTCTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACCGACATGAAGAAGCTCGAGGAAGCAGTGAGATCTGTCAGCATGGAAGGGTTGCTTTGGGGTGCATGTACGTCNTAG 543 0.477 MAVTFYDLSSTSGLKKLDEYLLSRSYITGYQASKDDLTVYAALPTAPSAEYVNVSRWYKHIDALLRISGVSGEGSGVTVEGTLVAEPVATPPTADTKAAAAEDDDDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVSMEGLLWGACTS 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2236g00001 180 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 106 114 IPR001326 GO:0003746|GO:0005853|GO:0006414
Vium2236g00001 180 MobiDBLite consensus disorder prediction 83 147 - -
Vium2236g00001 180 FunFam Elongation factor 1-delta 1 3 78 - -
Vium2236g00001 180 FunFam Elongation factor 1-beta 1 like 136 180 - -
Vium2236g00001 180 MobiDBLite consensus disorder prediction 100 115 - -
Vium2236g00001 180 SUPERFAMILY eEF-1beta-like 139 177 IPR036219 -
Vium2236g00001 180 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 8 178 - -
Vium2236g00001 180 MobiDBLite consensus disorder prediction 116 147 - -
Vium2236g00001 180 Pfam EF-1 guanine nucleotide exchange domain 144 177 IPR014038 GO:0003746|GO:0006414
Vium2236g00001 180 Coils Coil 114 134 - -
Vium2236g00001 180 CDD EF1B 140 177 IPR014038 GO:0003746|GO:0006414
Vium2236g00001 180 SUPERFAMILY GST C-terminal domain-like 11 67 IPR036282 -
Vium2236g00001 180 Gene3D - 135 180 IPR014717 -
Vium2236g00001 180 Gene3D - 3 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2236g00001 Vium-Chr2236 1166 2535 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2236g00001 5 177 Eukaryotic Initiation Factors Gene Family AT2G18110 76.571 2.40e-74 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2236g00001 K03232 - gmx:100777627 232.646