Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2233g00001 TGCTGCAGGTACTATAAACGTGTATTTGGAGAGTTCTTTGTGACAACTGACTCAAATGCTGAAAAGAACTCATCTGTTATTGTTCATGCATCTGAATACCATCGATTTGGTTGGTTGCTTTTCTTAGCTCTTCGTGTACATGCTTTCAGCCGCTTCAAAGACTTGGTGACTTGCACCAATGGTCTAATTTCAATCTTGGCCATCTTAATTATTCATGTTCCTACTCGATTTCGGAATTTCAACATTCATGACTCATCACGCTTTGTTAAGAAAAATAACAAAGGTGTGGACCTCCTTGCTTCACTTTGCAACATATACAACACTACTGAAGATGAGTTGAGGAAAACAATGGAGAAAGCCAATAATGTAATAGCAGATATATTGAAGAAGAAGCCCTGCTTGGCATCAGAATGCGAAACTGAAAACCTAGAAAATGTTGATAAAGATTGTTTGACCTATTTTAAAGATTTAATGGAAGAATCGTCTCTACCTTCAAGTTTATATTTATTAGAAAAGGATTATGATTACATGTTTCGCCACAAGAGTGAACTGGATGAGAGGTTATTCATTAATGATGATGACAGCCTATTAGCTTCTGGAAGTTTGTCTGGAGGTTCTGCTTCAGCAGGTGGTGTAAAGAGGAAATTTGATTCACTGGCATCACCTTCTAAGACCATTACAAGTCCACTCTCACCTCATCGCTCTCCATCTTCACATGCCAATGGCATCCCTGGTAGCGCAAACTCAAAGATGGCAGCCACCCCTGTAAGCACAGCAATGACTACAGCAAAGTGGCTTCGAACTGTCATTTCTCCACTTGCACCAAAGCCCTCGCAAGAGCTGGAAAGATTTCTGACATCATGTGATAGGGATGTTACAAGCGATGTAGTGCGCAGAGCACAGATTATATTGCAGGCTACTTTTCCTAGTAGTCCACTTGGAGAACTATGTGTAACTGGAAGCCTGCAAAGTGCAAACCTCATGGACAATATATGGGCAGAACAACGAAGATTGGAAGCTCTGAAGTTATACTACAGGGTCTTGGAGGCAATGTGCAGAGCTGAAGCTCAAGTTTTTCATGCAACTAATTTGACCTCTCTTCTTACGAATGAGAGGTTCCATCGGTGTATGCTTGCATGCTCTGCAGAATTAGTCCTGGCAACTCATAAGACTGTAACAATGTTGTTCCCTGCAGTACTTGAGAGGACTGGAATTACGGCCTTTGATCTTAGCAAGGTGATTGAAAGTTTCATTAGACATGAAGAATCTCTGCCAAGAGAATTGAGGCGACATCTGAATTCATTGGAAGAACGACTTTTGGAGAGCATGGTATGGGAAAAGGGTTCTTCAATGTATAATTCTTTGGCAGTTGCCAGACCTGCCCTTTCTGCAGAGATTAACCGCCTGGGACTGTTAGCTGAACCAATGCCATCATTGGATGAAATTGCAATGCAAATTAACTTCTCTTGTGGAGGGCTGCCACCAGTGCCTACCTTGCCCAAGCTTGAAAGTTCACCAATTCAGAATGGGGATATCAGATCACCAAAGCGAAATGTGTTGATGGAAAGAAATTCGTTCACTTCTCCTGTGAAAGATCGGCTTCTTCCCTTCAGCAATCTTAAGTCAAAACTACCCCCACCTCCTTTTCAGTCTGCTTTTTCCAGCCCAACAAAGCCAAATCCAGCAGGTGGAGGGGAAACATGTGCAGAAACTGGTATTAACATCTTTTTCGGCAAGATCATTAAGTTGGGAGCAGTCAGAATTAGTGGCATGGTTGAAAGACTGCAATTATCTCAACAAATAAGGGAGAATGTATACTGCCTTTTCAAGCGGATCCTACATCAAAGGACATCTCTCTTCTTCAACCATCATATTGACCAAATAATCTTGTGTTGTTTCTATGGAGTTGCGAAGATTTCACAATTAAACCTAACTTTTAGAGAGATAGTATACAACTACAGAAATCAACCACATTGCAAACCACAAGTTTTCCGCAGTGTATTTGTTGATTGGTCATTAGTACGCCGAAATGGGAGAACAGGACAGGAGCATGTTGACATCATCACCTTTTACAATGAAATATTTATTCCCTCAGTAAAGCCTCTATTGGTTGAACTTGACCCTTCTGGAGCAACTACAAAAAGTGACCGAATGCCTGAATTTGATAATAAAAGTGATGGCCATTTAGCTCAATGTCCAGGATCTCCTAAAGTATCATCTTTCCCTACCCTTCCCGATATGTCTCCAAAAAAAGTATCCGCTACACACAATGTATATGTCTCTCCGTTACGATCGTCCAAGATGGATGCTCTAATATCACACAGCTCAAAAAGCTATTATGCTTGTGTTGGGGAGAGCACTCATGCTTATCAGAGCCCTTCAAAAGACCTGACCGCCATCAATAACCGTTTGAATGGCAACAGGAAGGTGAGAGGACCCCTGAATTTTGATGATGTTGATGTGGGCTTGGTTAGTGATTCTATGGTTGCAAACAGCCTCTATCTGCAGAATGGAAGTTGTGCATCATCATCAGGTGCACCAGTGAAATCAGAGCAACCTGACTCTTGA 2568 0.4167 CCRYYKRVFGEFFVTTDSNAEKNSSVIVHASEYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPTRFRNFNIHDSSRFVKKNNKGVDLLASLCNIYNTTEDELRKTMEKANNVIADILKKKPCLASECETENLENVDKDCLTYFKDLMEESSLPSSLYLLEKDYDYMFRHKSELDERLFINDDDSLLASGSLSGGSASAGGVKRKFDSLASPSKTITSPLSPHRSPSSHANGIPGSANSKMAATPVSTAMTTAKWLRTVISPLAPKPSQELERFLTSCDRDVTSDVVRRAQIILQATFPSSPLGELCVTGSLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQVFHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPALSAEINRLGLLAEPMPSLDEIAMQINFSCGGLPPVPTLPKLESSPIQNGDIRSPKRNVLMERNSFTSPVKDRLLPFSNLKSKLPPPPFQSAFSSPTKPNPAGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYCLFKRILHQRTSLFFNHHIDQIILCCFYGVAKISQLNLTFREIVYNYRNQPHCKPQVFRSVFVDWSLVRRNGRTGQEHVDIITFYNEIFIPSVKPLLVELDPSGATTKSDRMPEFDNKSDGHLAQCPGSPKVSSFPTLPDMSPKKVSATHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGAPVKSEQPDS 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2233g00001 855 SUPERFAMILY Cyclin-like 262 457 IPR036915 -
Vium2233g00001 855 Pfam Domain of unknown function (DUF3452) 3 72 IPR024599 -
Vium2233g00001 855 MobiDBLite consensus disorder prediction 223 250 - -
Vium2233g00001 855 Pfam Retinoblastoma-associated protein B domain 573 700 IPR002719 GO:0005634|GO:0051726
Vium2233g00001 855 FunFam Retinoblastoma-related protein 1 523 736 - -
Vium2233g00001 855 Pfam Retinoblastoma-associated protein A domain 254 455 IPR002720 GO:0005634|GO:0051726
Vium2233g00001 855 Gene3D - 537 722 - -
Vium2233g00001 855 Gene3D - 257 445 - -
Vium2233g00001 855 SMART RB_A_2 254 455 IPR002720 GO:0005634|GO:0051726
Vium2233g00001 855 Coils Coil 110 130 - -
Vium2233g00001 855 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 2 853 IPR028309 GO:0006357|GO:0051726
Vium2233g00001 855 FunFam Retinoblastoma-related protein 1 33 191 - -
Vium2233g00001 855 SUPERFAMILY Cyclin-like 571 710 IPR036915 -
Vium2233g00001 855 Gene3D - 33 191 - -
Vium2233g00001 855 FunFam Retinoblastoma-related protein 1 257 445 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2233g00001 3 855 Core Cell Cycle Gene Families AT3G12280 71.871 0.0 1230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Vium2233g00001 RB_A 1.8e-64 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2233g00001 K04681 - gmx:100779266 1558.12