Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2231g00006 ATGGAGGAGAGGAAGTATGTTTGCAAGTATTGCAGCAAGAGGTTTCCTTGTGGGAAGTCTCTGGGGGGTCACATCAGGACCCATATGACTGAGGAAAGAAGTAATGCTGATGCTGACATCTTCATCAAGTCGGATGGTGTCAAGAAGAAGAGAGATTTATGGTGCGAAGATGTTGTCGGGAACCCCATTTATGGCCTCAGAGAGAATCCCAAGAAAACAATGAGGTTTGTGCATTCCGGCTCTCGTCGTGGTTGTGGTAGTGGTGTTGCCGGTGCCAACAATGAAAAGGAGAAGTTCTGCAAAGAATGCGGGAAAGGTTTCCCATCGCTGAAAGCTCTATGTGGTCACATGGCTAGTCACTCCGATAAAGAGAAGAGAACCATCAAGTTTGAAGACAGTGACAAGAAACTGAAATTGGTTATGGACAGTCAATCTGACACCGAGACCTGTCCTCCATCTCATCCAAGGAGATCCAAGAGAATGAGGGTCAAGACCATTAACCTTTCCAATCACCCTTTTCCTTCCTCTTCTCCTTCTTCTTATTCTGTTCCGTTGCCCAATGGCTCTTCACCCGTTTCAGAGGTAGAGCAGGAGCAAGAAGAGGTTGCTAGGTGCTTGATGATGCTGTCTAGAGATTCTAGCTTCAAGGGTCGTTTTGCTTCGGTTGCCGAATGTTCTGATAACAACTCAGTTGTTCTAGAAGCAAAATCATCCTCTCCTGATATTCGGATTGGTGTCAGCAATGGTTCTAGATATTTCAAACACGGTCCCAAAACCAAAATGGTTGACTCAGATGTCTCCAATGATCAATTTAAGTGGCCCAAAGTGGGAGATAAGTCAAGCAAATACACTGCAACTTTGGTGAAGAAGTCAGTGATGGAGGAGTTGGATTATGATGGAACAGATGGAACTGCAAGGAAGTTTGATTCCAGAAAGAGAAGCAACTATGATTATTCTCTTGATAACAATCCAGTTGGTGGTTCTAGCAAGAAGATAGCAAATGGTTTTGGCAATGAAGTATATGAGAATAGTACAAAAGGTTGGAAATACGAGTCTTTGGAGGGTGAAAGGGACTATGATTCTTTTGATTATTCCATTGAGGAGAGCCATGAAAACAGTTCAGAGACAGAATCTTATCCTGCTCCCAGCTCTCATAACAGTAAGGCCCTCAATGGGAAGAAGTCCACCAGCAAGGCCAAGAAGAAGTTGAAGTCTAAGAAAAGCAGGGATCATGAGTGTCCAATCTGCTACAAAATTTTCAGGTCAGGTCAAGCCTTGGGAGGACACAAAAGATCTCATTTCATTGGTGGTTCTGAAGAAAACACTTTGGTGATCAAACAAGCTGCTCCTGTTGTTCCATGCTTGATTGATCTAAATCTACCTGCTCCTGTTGACGAATAA 1401 0.4368 MEERKYVCKYCSKRFPCGKSLGGHIRTHMTEERSNADADIFIKSDGVKKKRDLWCEDVVGNPIYGLRENPKKTMRFVHSGSRRGCGSGVAGANNEKEKFCKECGKGFPSLKALCGHMASHSDKEKRTIKFEDSDKKLKLVMDSQSDTETCPPSHPRRSKRMRVKTINLSNHPFPSSSPSSYSVPLPNGSSPVSEVEQEQEEVARCLMMLSRDSSFKGRFASVAECSDNNSVVLEAKSSSPDIRIGVSNGSRYFKHGPKTKMVDSDVSNDQFKWPKVGDKSSKYTATLVKKSVMEELDYDGTDGTARKFDSRKRSNYDYSLDNNPVGGSSKKIANGFGNEVYENSTKGWKYESLEGERDYDSFDYSIEESHENSSETESYPAPSSHNSKALNGKKSTSKAKKKLKSKKSRDHECPICYKIFRSGQALGGHKRSHFIGGSEENTLVIKQAAPVVPCLIDLNLPAPVDE 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2231g00006 466 SUPERFAMILY beta-beta-alpha zinc fingers 4 120 IPR036236 -
Vium2231g00006 466 MobiDBLite consensus disorder prediction 142 161 - -
Vium2231g00006 466 ProSitePatterns Zinc finger C2H2 type domain signature. 413 433 IPR013087 -
Vium2231g00006 466 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Vium2231g00006 466 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Vium2231g00006 466 ProSiteProfiles Zinc finger C2H2 type domain profile. 411 433 IPR013087 -
Vium2231g00006 466 MobiDBLite consensus disorder prediction 367 407 - -
Vium2231g00006 466 Pfam C2H2-type zinc finger 6 30 - -
Vium2231g00006 466 Pfam C2H2-type zinc finger 100 122 - -
Vium2231g00006 466 Pfam C2H2-type zinc finger 411 433 - -
Vium2231g00006 466 MobiDBLite consensus disorder prediction 168 191 - -
Vium2231g00006 466 MobiDBLite consensus disorder prediction 375 393 - -
Vium2231g00006 466 Gene3D Classic Zinc Finger 1 53 - -
Vium2231g00006 466 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Vium2231g00006 466 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 466 - -
Vium2231g00006 466 SMART c2h2final6 6 28 IPR013087 -
Vium2231g00006 466 SMART c2h2final6 411 433 IPR013087 -
Vium2231g00006 466 SMART c2h2final6 98 120 IPR013087 -
Vium2231g00006 466 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2231g00006 Vium-Chr2231 57186 59771 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2231g00006 1 466 C2H2 Transcription Factor Family AT1G26610 40.631 2.90e-87 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium2231g00006 zf-C2H2_6 4.9e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2231g00006 - - vun:114177115 804.283