Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2230g00012 ATGAATTGGGATTTGAGGCTTGGTATAGCACTAGATGTTGCAAGGGGACTGGAATATCTACATTGTGGGGCTTCTCCACCTGTTGTGCACCGTGACATCAAATCTTGCAACATACTGTTGGATCAGTTTATGAAGGCCAAGGTCACTGACTTTGGGCTTTCCAGACCTGAGATGATCATACCTCGCACATCAAATATCCGTGGAACTTTCGGATATCTTGATCCTGAGTATTTGTCTACAAGAACCTTCACTAAGAAAAGTGATGTTTATAGCTTTGGTGTGCTACTGTTTGAGCTCATAACTGGCAGGAATCCGCAGCTTGGGCTCATGGAATATGTAAAACTAGCAGCCATGGAAGGTGGGGGTAAGGTTGGATGGGAAGAAATTGTGGACGGGCAATTAAATGGAAAATATGATGTGGATAATCTTAACGACATGGCTTCACTTGCATTCATATGTGTTAGTGAAGTCTCCCAAAGCCGACCAACGATGTGTGAAATTGTTCAAGCATTATCTCAGCTTTGTAAGAGGAATGGTAAAAATCTTGGCCGAACATCATCTGCTGCTGCATTAAAGGATGTGTGTATTGAAGTGGACCAGATTGAAACTAAGGACTTTACATCAACTGCGAGTACAGATATATTGGGAAGATTGCATAGCCGATGA 666 0.4249 MNWDLRLGIALDVARGLEYLHCGASPPVVHRDIKSCNILLDQFMKAKVTDFGLSRPEMIIPRTSNIRGTFGYLDPEYLSTRTFTKKSDVYSFGVLLFELITGRNPQLGLMEYVKLAAMEGGGKVGWEEIVDGQLNGKYDVDNLNDMASLAFICVSEVSQSRPTMCEIVQALSQLCKRNGKNLGRTSSAAALKDVCIEVDQIETKDFTSTASTDILGRLHSR 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2230g00012 221 Gene3D Transferase(Phosphotransferase) domain 1 1 196 - -
Vium2230g00012 221 FunFam calcium/calmodulin-regulated receptor-like kinase 1 1 192 - -
Vium2230g00012 221 PANTHER OS01G0750732 PROTEIN 1 188 - -
Vium2230g00012 221 ProSitePatterns Serine/Threonine protein kinases active-site signature. 28 40 IPR008271 GO:0004672|GO:0006468
Vium2230g00012 221 ProSiteProfiles Protein kinase domain profile. 1 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2230g00012 221 Pfam Protein kinase domain 9 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2230g00012 221 SMART serkin_6 1 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2230g00012 221 SUPERFAMILY Protein kinase-like (PK-like) 1 171 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2230g00012 Vium-Chr2230 48157 49730 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2230g00012 1 201 Receptor kinase-like Gene Family AT1G49100 41.667 2.37e-44 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Vium2230g00012 Pkinase 8.1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2230g00012 - - gmx:100816549 348.977