Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2229g00007 ATGGAATGTAAGAGAGGAAAAGAGAAGGTTCCAGCCAAAGCAAAAAACGTAAAAACATCAAGGAAAATTAGAATTGTGTACACTGACCCTGATGCTACAGATTACTCAAGTCAAGAAGAAGAAGAAGAAGAAGAAGATGATGATAAGTTGTTGAGAAATGGCTATGAGGTAAGTGGTTGCTCCAAGCGGGTTGTGAAGGAAATCTTGCTTCCATGCATGCAAAGCAAGTTACAAGAAGAGAATTCATCACAAGATGTAAACAGTGAAAAGATGAAAGCAAGTCCAATCGATTTTTCAAGTGGGAGGATGAGGAAACCATCAAGCGTGTACAAAGGTGTTCAACGTAGGAAATGGGGGAAGTATGTAGCAGAAATCAGAGACCCTATTCAAGGGGTGAGAGTGTGGCTTGGTACATTTGATACCGAACAAGAGGCTGCCATGGCTTATGAGAGAAAGAAGAATGAGTTTGAAAGGTCGAGAAAAAGGGATGCAGTGGCTTTTGACAGTTCCAAAGAAGTGTTGTTTCATGCATCTCCATCGTCAGTGCTTGATGTCTGCACTACAAAAGCTTCACTAGATGTTAGTGATCTGAATGATTCAGTCAAAGAAAATTTCAATGTGGAAAAGGTTGGTGAAGGAGGAGGCACTGATGTGGAAGTGGAACCAGTCAACAGTGAAGATAATTCAACACAACTTTTGCTGGAGGAGCCAGTTATGGCATCATTGTTTGGATATGATGGTTTCTATTTGGATGAAGCAGAGAAAAGGGGAATTCTGCTTGATAATGAGTTTCATAATTTCTTGGACAATGACTTCAAAGGTGGTTTTATGTGGAATGTGGAACATGGGGAAGCCACTGTCCTTCCCCCTGTGGACAGTTCTTTTGATGAGTTAGCTTGGATTGATGAAACTCTAGATTGGGAAAGCTCGTGA 933 0.4105 MECKRGKEKVPAKAKNVKTSRKIRIVYTDPDATDYSSQEEEEEEEDDDKLLRNGYEVSGCSKRVVKEILLPCMQSKLQEENSSQDVNSEKMKASPIDFSSGRMRKPSSVYKGVQRRKWGKYVAEIRDPIQGVRVWLGTFDTEQEAAMAYERKKNEFERSRKRDAVAFDSSKEVLFHASPSSVLDVCTTKASLDVSDLNDSVKENFNVEKVGEGGGTDVEVEPVNSEDNSTQLLLEEPVMASLFGYDGFYLDEAEKRGILLDNEFHNFLDNDFKGGFMWNVEHGEATVLPPVDSSFDELAWIDETLDWESS 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2229g00007 310 SUPERFAMILY DNA-binding domain 108 156 IPR016177 GO:0003677
Vium2229g00007 310 SMART rav1_2 109 174 IPR001471 GO:0003700|GO:0006355
Vium2229g00007 310 MobiDBLite consensus disorder prediction 25 51 - -
Vium2229g00007 310 MobiDBLite consensus disorder prediction 79 94 - -
Vium2229g00007 310 CDD AP2 108 151 IPR001471 GO:0003700|GO:0006355
Vium2229g00007 310 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 20 169 - -
Vium2229g00007 310 ProSiteProfiles AP2/ERF domain profile. 109 168 IPR001471 GO:0003700|GO:0006355
Vium2229g00007 310 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Vium2229g00007 310 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Vium2229g00007 310 MobiDBLite consensus disorder prediction 34 49 - -
Vium2229g00007 310 MobiDBLite consensus disorder prediction 79 103 - -
Vium2229g00007 310 Pfam AP2 domain 108 157 IPR001471 GO:0003700|GO:0006355
Vium2229g00007 310 Gene3D AP2/ERF domain 109 168 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2229g00007 Vium-Chr2229 44653 45585 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2229g00007 21 157 AP2-EREBP Transcription Factor Family AT1G68550 41.549 2.08e-21 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium2229g00007 AP2 4.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2229g00007 - - pvu:PHAVU_004G157600g 446.047