Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2229g00004 ATGAAAGAAGCAAGTGCATTAGGAGCTAGAACTGCTCGAGCATGCGAGAGCTGTCTAAAAGTAAGAGCACGGTGGTTTTGTGCTGCTGATGATGCTTTCCTTTGCCATGGCTGTGACAACATGGTTCACTCGGCAAACCAATTAGCACGCAGGCACGAAAGGGTTAAGCTTCAAACTGCATCCTCTAAGGTCAACTACTCAGTGACCCTTAATCAGAACAATAAGGTAGCATGGCACAGTGGATTCACACGCAAGGCAAGAACACCGCGCCACAACAGCAAGCACGTAACGGTGCAGCTACAAGAACAACAGAAGAAAATAGTACACGAAGAAGAAGTGTTTTTCAACAACACCATTAGTCTTCCCCTTGTGCCAGAGCTTGGAAGTGAAGAAGCACTGCATAATTATGAGAGTGAGGAGCAGCTATTGTGTCGCGTGCCCGTGTTTGATGCTGAGCTTTGTAGTGTATACAATGAAGTGAAGGAAGAGGTTTTAGCTGGTGAAGAAGTCTTTGACTTAGACAATTTTTCTTCCGAGCTTCTGCCATCAGATATGGATCTTGCTGAGTTTGCTGCTGATGTGGAAAGCTTACTTGGAAACGGAGCTGACGAGGATTCATCTGAGCACGTGAAAGGATCAGAACTGCTGCTTGATTGCAAAGAAGAAGATGAAGAAATGGATGCATGTGTTGATGCAGTTGGAGCCAAAGAAACAATGGTGAAGGTCAAAGATGAAGAAGAACTTGATTCTGATACACCTTGCCATTTGGATTCGATTATTCTTGACATGAACAGCGAGGCCTTTAATTGGAATGATATTGTTGGGTCAGAATCACTTGCTCAGGAACAGGAAGAGGAGGCAAGTACAGTGGGAACCGACAAGAAGGACATGTTTTTGAGGCTAAACTATGAAGATGTTATTAGTGCTTGGGCCAGTCAAGGTTGTTCTCCATGGACAACAGGAACCCCACCAAACTTCAACTCAGATGATTGCTGGCCAGATTTCTTGGGTTCGAATGGAGGGGATGTTCAGTGCTGTTATGGGGAAATGAAAAGTTTAAGAGGGCATGCAGATGGTGGAAGAGAAGCAAGAGTGTCAAGATACCGAGAGAAGAGAAGAACTCGTTTATTTGCAAAGAAGATAAGGTATGAAGTGAGGAAATTGAATGCTGAGAAAAGACCTAGAATGAAAGGTCGATTTGTGAAGAGAACATCCATTGCTTTGCCAGCATAG 1233 0.442 MKEASALGARTARACESCLKVRARWFCAADDAFLCHGCDNMVHSANQLARRHERVKLQTASSKVNYSVTLNQNNKVAWHSGFTRKARTPRHNSKHVTVQLQEQQKKIVHEEEVFFNNTISLPLVPELGSEEALHNYESEEQLLCRVPVFDAELCSVYNEVKEEVLAGEEVFDLDNFSSELLPSDMDLAEFAADVESLLGNGADEDSSEHVKGSELLLDCKEEDEEMDACVDAVGAKETMVKVKDEEELDSDTPCHLDSIILDMNSEAFNWNDIVGSESLAQEQEEEASTVGTDKKDMFLRLNYEDVISAWASQGCSPWTTGTPPNFNSDDCWPDFLGSNGGDVQCCYGEMKSLRGHADGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSIALPA 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2229g00004 410 SMART bboxneu5 10 57 IPR000315 GO:0008270
Vium2229g00004 410 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Vium2229g00004 410 Pfam B-box zinc finger 12 57 IPR000315 GO:0008270
Vium2229g00004 410 CDD Bbox1_BBX-like 14 55 - -
Vium2229g00004 410 ProSiteProfiles CCT domain profile. 361 403 IPR010402 GO:0005515
Vium2229g00004 410 Pfam CCT motif 361 403 IPR010402 GO:0005515
Vium2229g00004 410 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 5 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2229g00004 Vium-Chr2229 29555 32467 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2229g00004 4 403 C2C2-CO-like Transcription Factor Family AT1G25440 44.548 3.48e-95 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vium2229g00004 zf-B_box 2.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2229g00004 - - gmx:100802113 619.387