Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2229g00002 ATGCGGTTCAGCTGCAATGGTTGCCGCGTCCTCCGCCGTGGCTGCACGGCGGACTGCCCCATTCGAAGGTCCCTCGAATGGATAAGTTGCCCTCACTCTCAGTCCAACGCCACCCTCTTTCTCGCTAAGTTCTATGGCCGTCAAGGCCTCCTCAACCTCCTCATCAACGCTCCCTCCCATCTCCAACCAGCGGTATTCAAATCTTTGCTTTACGAAGCTTGCGGTAGGATGGTGAATCCGATTTTCGGCTCGACCGGGTTACTCTCGACCGGAAATTGGCACCTCTGTGAAGCTGCTGCCAAAGCCGTTCTCAGTGGCGCGCCGATTCAACAGGCTCTTCTTGATGGAGTGGAGAGCCTCGATTTCAAGGCTTGCGATATTCGCCACGTGGCAAAGAGTCACAAATCGTACGGCCCTGGTGCACTCAAAGTAGTAAAGTCACGGACCAGCAAGTTCAAGCGCCGCGCTGCGAAGCCAAAAGTGGACTCAACCGTTGCTGAGTTGGGTGAAAGCGAGTTATTTGGACAGGGTTCTCTGAGTCAGGATTCGGCGTCTGGGTTGACTCGGACGAGTGAGAACAAAATCATTGGTGGGGAAGCCGATAGTAGCTGCAGCGAGAATGTCGTGGTGCCGCCGGCTCGAGCCAATGATGAAGAAATTGAGCTTCGGTTGACTTTGGGGTGGGGACCATTGGAAAAATCAATAACTGCTGTATTGCCACGTGTAGGGCTCGATCTTTCTGGCTAG 747 0.5422 MRFSCNGCRVLRRGCTADCPIRRSLEWISCPHSQSNATLFLAKFYGRQGLLNLLINAPSHLQPAVFKSLLYEACGRMVNPIFGSTGLLSTGNWHLCEAAAKAVLSGAPIQQALLDGVESLDFKACDIRHVAKSHKSYGPGALKVVKSRTSKFKRRAAKPKVDSTVAELGESELFGQGSLSQDSASGLTRTSENKIIGGEADSSCSENVVVPPARANDEEIELRLTLGWGPLEKSITAVLPRVGLDLSG 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2229g00002 248 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Vium2229g00002 248 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Vium2229g00002 248 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 4 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2229g00002 Vium-Chr2229 23288 24687 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2229g00002 1 238 AS2 family AT3G02550 44.223 1.25e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium2229g00002 LOB 5.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2229g00002 - - vun:114181255 428.328