Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2229g00001 ATGAATCCACCATCAAATAACCACAATATAGAACCAAGAGACCTGGGAAATTCAGGTTCAAATATCAATAATGGAGTTAACTCACCCCAGAGGAAGGTTTTGTCAGGAACAAAGCTGCAACGTGTTTTACACAGTCCACTTATGGCAGAGCCATCACCAACGTTAATAAACCAAGTAGGTTCTAACAAGTTTCCTGAGGTGTTTCGAGTAAAACAAGGAAGCTATGCTGATCATCCTTCAGCCAAAATTTCAGAACTGATGAAATCAACTAGCTTGGATAATGCTCCTACTCAGTCGCTTTTGAGTGTGGTGAATGGTATTTTGGAAGAAAGTGTTGAAAGAAGAAATGGCGAAATACCCCAACGTGTGGCTTGCTTATTGAGAAAGGTTGTGCAAGAGATTGAGCGACGTATATCAACTCAAGCAGAACATTTAAAAACTCAAAACAATATTTTTAAGGCCCGTGAAGAAAAATATCACTCAAGAATCAGAGTCCTTGAAGCTCTTGCATCTGGAACTGAGGAAGAAAGAGAGATTGTTAGCATAAACCAACTTCAACATTTGAAGACTGAGAGGATTGAAAAAGAAGAAAAGAAGGTAGATGAATTAAAACAAACTAGGATGACTAAAATGCAAGAAGAAAAGGAAAATGATGATAAAACTAAGGAAATTTCAACATTGAAACAAAAGCTAGAAACGATGAAAAAAACATACGAAGTACAATGTTCACAGATGGAACGAAAAACTAAGGAGGAAAATAGAGCAGATGGCAAAGAGATTAATAGATATATTAACGAGTTAGAGGACAAAACTATGGAAATTTCAACATTAAATCAGAAACTAGAAACAATGAAAAAAACGTGTGAAGAGCAACGCTTAAAATTAGAAGCAAAAGCCGAGGAGGGAAAGATGACAGATGAGAAAGATGTAATGAAAATGTTAGAGGACAAAAACATTGAAATTTCAACGTTGAGGAAAAATCTAGAAACACTAGAAACAATATCAAAAACATATGAAGTACAGTGTTCACAGTTGAAAGCAAAAGTTGAGGAGAAGAACATGACAGATGGAACAGATTCTATCAGATATGTTAAAGAATTAGAGGACAAAAACATGGAAATTTCAACGTTGAAGCAAAAACTAGACAAAGTAGAAACGATGGCAAAAACATATGAAGTAGAGTGTTCACAGTTGAAAGCAAAAGTTGAGGAGAAGAACGTGACAGATGGAAAAGATTCTATCAGATATATTAAAGAATTGGAGGACAAAAATATGGAAATTTCAATACTAATCAAAAAGCTAGAGACAATGAAAAAAGAATATGAAGTACAATGCTCACGGTTGGAAGCAAAAGCTGAGGAGAAAAAGAACGAAGAGGGTAAAGAGGTTAGTAGATATATTAAAGAGCTAGAGGACAAAGATATGGAAATTTCAACACTGAGGCAAAAACTAGAAACAGTGACAAAAACATACGAAGTACAATGCTCACAACTGAAAGCAAAAGCTGAGGAGGAAAAGATGGAAAATGGAAAAGAGGCTATCAGTTATATTAAAGAGTTGGAGGAAAAAAATAAGGAAATTTCTGCATATAGGCAAGAATTGGAAACAATGAAAAAAACATATGAAGTTCAATGCTCACAGATGAAAGCAAAAACTGAAGAGGAAAAAATAGCAAATGGGAATGAGACTATTAGATATATCAAAGAGCTAGAGGAAAAAAATATGGAAATTTCAGCATTTAAACAGGAGCTAGAAACAATGAAAAAAACACATGAAGTTCAGTGCTCACAACTGAAAGCAAACGCTGAAGAGGAAAAAATGGCGAATGGGAGAGAAATTATTAAATATACCAAAGAGCTAGAGGACAAAAACATGGAAATTTTAGCATTTAAGCAAGAACTAGAAACAACGAAAGAAGCATATGAAGCACAATGCTCAGAACTGAAAGCAAAAGCTCAAGATGAAAAAATGGCGAATGAGAAAGAAATTATGAAATATATGAAAGAGGTAGAGGACAAAAGTATGGAAATTTCATCATTTAAGCAAGAACTAGAAACAACGAAAAGAACACATGAAGTACGATGCTCAGAATGGGAAGCAAAAGTGGAGGCTGGTAAAGAAGAGCTGAAAGAGAAATCACAAGAATACGAAAATTTGTTGGAAAAACTAAGAAATAAGGTTAAAGAGAATGAAACCCTTTACGAGTCAAAATATCAGAAGTGGATGCAGAAAGAGAACCAGATACGAAAAGATGTGAATATTCAGTTCAGTTCCATAAAGACATTGAAATTATCATGGGAATCTATCAAGCAAGATGCTTTGAAAGAGCAAATTATTTACTCTGAGGAATGTAAAAAGTTAGGTTTAAATCTGAAACCACTAGTAGATGCAGCTGAGAATTATCAAATAGTTCTTGCAGAAAACCGAAAACTGTTCAATGAAGTTCAAGAATTAAAAGGAAATATAAGAGTATATTGTCGACTTAGACCATTTCTTCCTGGTCAAAAGGAAAAACAATCTATTGTGGAACACATTGGTGAAACTGAGTTGGTTGTGGCAAATCCTTCCAAACCAGGAAAGGAAGGCCTTAAAACATTTAAGTTCAATAAGGTCTATGGTCCAACCTCAACTCAAGCTGGGGTGTATGCTGACATACAAGCCTTCATACGATCAGTATTGGATGGGTATAACGTATGTATATTTGCTTATGGTCAAACTGGTTCAGGGAAAACTTTCACAATGAGTGGTCCAAATAATGCAACACCCGAGACTGTTGGTGTTAACTATCGAGCTCTTAATGATCTCTTCAGCATATCTACAAGTAGAAAAAGCTCCATAGAGTATGAGATTGGTGTTCAAGTAATTGAGATATACAATGAACAAGTTCGAGACTTATTAACAACTGATGCTTCAAAGAAAACACTTGGGATACTGAGTAATGCTCAACCAAATGGATTAGCAGTGCCTGATGCTACCATGCAACCTGTGAAATCACCTGAAGATGTCATAAAGCTAATGGACATTGGTCTGAAAAATAGAGCTAAGGGTTCGACAGCTATGAACGAAAGAAGTAGTCGTTCTCACAGTGTTGTCTCAATTCATGTTCGTGGGATGGATAAAAAGGCTGGTTCCTCTCTTCATGGTAATCTTCATTTGGTAGATTTAGCAGGAAGTGAAAGAGTTGATCGCTCTGAAGTAACTGGGGATAGACTCAAGGAAGCACAACATATCAACAAATCACTATCTGCTCTTGGAGATGTCATTTTTGCACTTTCTCAGAAGACTGCTCATGTGCCATATAGAAATAGCAAGCTCACTCAACTTCTGCAAACATCTCTTGGTGGTCAAGCAAAAACACTCATGTTGGTCCAAATTAATTCTGATGTAAAGTCTTTTTCTGAATCTTTGAGTACTTTAAAGTTTGCTGAGAGGGTTTCCGGAGTTGAGTTAGGAGCTGCTAAAAGTAGCAAAGAAGGAAGAGATGTTAGAGAATTAATGGAACAGGTGGCTTCTTTGAAGGACACTATTTCGGTTAAAGATGAGGAGATTGAGAAGTTACAATTACTTAAGGATCTAAAAAATGTATATCCTGGTGCTAATTCTGAGAACGTTGAAACTGCCTAA 3624 0.3579 MNPPSNNHNIEPRDLGNSGSNINNGVNSPQRKVLSGTKLQRVLHSPLMAEPSPTLINQVGSNKFPEVFRVKQGSYADHPSAKISELMKSTSLDNAPTQSLLSVVNGILEESVERRNGEIPQRVACLLRKVVQEIERRISTQAEHLKTQNNIFKAREEKYHSRIRVLEALASGTEEEREIVSINQLQHLKTERIEKEEKKVDELKQTRMTKMQEEKENDDKTKEISTLKQKLETMKKTYEVQCSQMERKTKEENRADGKEINRYINELEDKTMEISTLNQKLETMKKTCEEQRLKLEAKAEEGKMTDEKDVMKMLEDKNIEISTLRKNLETLETISKTYEVQCSQLKAKVEEKNMTDGTDSIRYVKELEDKNMEISTLKQKLDKVETMAKTYEVECSQLKAKVEEKNVTDGKDSIRYIKELEDKNMEISILIKKLETMKKEYEVQCSRLEAKAEEKKNEEGKEVSRYIKELEDKDMEISTLRQKLETVTKTYEVQCSQLKAKAEEEKMENGKEAISYIKELEEKNKEISAYRQELETMKKTYEVQCSQMKAKTEEEKIANGNETIRYIKELEEKNMEISAFKQELETMKKTHEVQCSQLKANAEEEKMANGREIIKYTKELEDKNMEILAFKQELETTKEAYEAQCSELKAKAQDEKMANEKEIMKYMKEVEDKSMEISSFKQELETTKRTHEVRCSEWEAKVEAGKEELKEKSQEYENLLEKLRNKVKENETLYESKYQKWMQKENQIRKDVNIQFSSIKTLKLSWESIKQDALKEQIIYSEECKKLGLNLKPLVDAAENYQIVLAENRKLFNEVQELKGNIRVYCRLRPFLPGQKEKQSIVEHIGETELVVANPSKPGKEGLKTFKFNKVYGPTSTQAGVYADIQAFIRSVLDGYNVCIFAYGQTGSGKTFTMSGPNNATPETVGVNYRALNDLFSISTSRKSSIEYEIGVQVIEIYNEQVRDLLTTDASKKTLGILSNAQPNGLAVPDATMQPVKSPEDVIKLMDIGLKNRAKGSTAMNERSSRSHSVVSIHVRGMDKKAGSSLHGNLHLVDLAGSERVDRSEVTGDRLKEAQHINKSLSALGDVIFALSQKTAHVPYRNSKLTQLLQTSLGGQAKTLMLVQINSDVKSFSESLSTLKFAERVSGVELGAAKSSKEGRDVRELMEQVASLKDTISVKDEEIEKLQLLKDLKNVYPGANSENVETA 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2229g00001 1207 Coils Coil 417 458 - -
Vium2229g00001 1207 Coils Coil 463 483 - -
Vium2229g00001 1207 Coils Coil 314 334 - -
Vium2229g00001 1207 Coils Coil 186 248 - -
Vium2229g00001 1207 SMART kinesin_4 819 1156 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium2229g00001 1207 PRINTS Kinesin heavy chain signature 1098 1119 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium2229g00001 1207 PRINTS Kinesin heavy chain signature 895 916 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium2229g00001 1207 PRINTS Kinesin heavy chain signature 1049 1067 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium2229g00001 1207 PRINTS Kinesin heavy chain signature 1018 1035 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium2229g00001 1207 Coils Coil 567 601 - -
Vium2229g00001 1207 Coils Coil 260 301 - -
Vium2229g00001 1207 Gene3D - 306 347 - -
Vium2229g00001 1207 Gene3D - 207 246 - -
Vium2229g00001 1207 Gene3D - 658 699 - -
Vium2229g00001 1207 Gene3D - 559 600 - -
Vium2229g00001 1207 Gene3D - 508 550 - -
Vium2229g00001 1207 Gene3D - 357 400 - -
Vium2229g00001 1207 Gene3D - 408 449 - -
Vium2229g00001 1207 Gene3D - 458 500 - -
Vium2229g00001 1207 Gene3D - 256 296 - -
Vium2229g00001 1207 Gene3D - 609 649 - -
Vium2229g00001 1207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 821 1186 IPR027417 -
Vium2229g00001 1207 PANTHER KINESIN-LIKE PROTEIN KLP-3 680 1185 IPR027640 GO:0003777|GO:0007018
Vium2229g00001 1207 Coils Coil 620 669 - -
Vium2229g00001 1207 Coils Coil 1162 1182 - -
Vium2229g00001 1207 Gene3D Kinesin motor domain 762 1150 IPR036961 -
Vium2229g00001 1207 ProSiteProfiles Kinesin motor domain profile. 821 1148 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium2229g00001 1207 FunFam p-loop containing nucleoside triphosphate hydrolases superfamily protein 763 1150 - -
Vium2229g00001 1207 Coils Coil 681 740 - -
Vium2229g00001 1207 Pfam Kinesin motor domain 827 1146 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vium2229g00001 1207 Coils Coil 513 551 - -
Vium2229g00001 1207 MobiDBLite consensus disorder prediction 1 35 - -
Vium2229g00001 1207 Coils Coil 367 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2229g00001 Vium-Chr2229 5985 11834 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2229g00001 809 1182 Calmodulin-binding Proteins AT5G65930 37.995 1.86e-65 241