Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2228g00001 ATGGGAAGGGGAAAGATTGTGATTGAAAGGATCGACAATTCCACAAGCCGGCAAGTCACTTTCTCCAAGAGGAGAAAGGGACTGATCAAGAAAGCCAAAGAGCTTGCAATCCTCTGTGATGCACAAGTTGGCCTTCTCATATTCTCCAGCACGGGAAAGCTTTACGAGTATGCCAGCACCAGCATGAAATCCATAATTGAGAGATACAATGCATGCAAGGAAGAACAACACCATCAGATAAATCCAGAAGCCGAAGTCAAGTTTTGGAAGAGGGAGGCAGAGATTCTAAGGCAACAACTACAGATTCTACAAGAAAACCATCGGCAAATGATGGGAGAACAACTTTATGGTCTGAGTGTCAGAAGCCTGCAAGATCTGGAGAATCAACTGGAAATGAGCCTCCAAGGTGTCCGTATGAAAAAGGAACAAATTCTAAAGGATGAAATTCAAGAGCTGAACCGGAAGGGAAACCTTATCTTCCAGGAAAATGTGGAACTTTACAAGAAGGTGTATGGTACAACAGATACAGCCACAACAAGCAGAAATGCATTTGTTCCACTTCCATTTGGTATGCATGCAGGAGGGCCTCCACAAGAATTAGTCCAGCTTCAGTTATGCCAGCCTGAGCAAGAAGCTTATGAGACATCAGACACTGCCACAAAATAA 666 0.4384 MGRGKIVIERIDNSTSRQVTFSKRRKGLIKKAKELAILCDAQVGLLIFSSTGKLYEYASTSMKSIIERYNACKEEQHHQINPEAEVKFWKREAEILRQQLQILQENHRQMMGEQLYGLSVRSLQDLENQLEMSLQGVRMKKEQILKDEIQELNRKGNLIFQENVELYKKVYGTTDTATTSRNAFVPLPFGMHAGGPPQELVQLQLCQPEQEAYETSDTATK 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2228g00001 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vium2228g00001 221 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vium2228g00001 221 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium2228g00001 221 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Vium2228g00001 221 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Vium2228g00001 221 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Vium2228g00001 221 Coils Coil 123 143 - -
Vium2228g00001 221 ProSiteProfiles K-box domain profile. 86 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vium2228g00001 221 Coils Coil 86 113 - -
Vium2228g00001 221 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Vium2228g00001 221 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vium2228g00001 221 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Vium2228g00001 221 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vium2228g00001 221 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vium2228g00001 221 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vium2228g00001 221 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2228g00001 Vium-Chr2228 7413 17719 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2228g00001 1 220 MADS-box Gene Family AT4G37940 61.364 9.33e-92 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vium2228g00001 K-box 8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2228g00001 K09264 - gmx:100778427 391.349