Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2226g00001 ATGGCTCCAAGGGATAGAACCACCGCACTCGCCGGACCCGGCCCAAGCCCAGCGCAGGCCAACAAAGAGATCCGCTACAGGGGCGTCAGGAAACGCCCATGGGGCCGTTACGCCGCCGAGATCCGCGACCCTGGCAAGAAAACCCGCGTCTGGCTCGGCACCTTCGACACAGCCGAAGAAGCCGCAAGAGCCTACGACGCCGCCGCTCGCGATTTCCGAGGCGCCAAGGCAAAGACCAATTTCCCCACACCTTCCGAACTTCTCGTAAACAACCATAGCAGTAGCAACAACAACAGCGCGCGTAGCCCTAGCCAGAGCAGCACCCTGGACTCTTCCTCCCCGCCGCCACCGCCTCCTCTGCTAGACCTTACGCTCACACCTCTCACCGCCTCGGTCCTCCCTGCCGCACGCCCAGTCCTTTTCTTCGATGCTTTCGCGCGTGCGGACACAGTTATCGCCGTCGGGCGCAGGGACACCTGTGGCTTCGGACGTCCGGCGACCGATTTCCGCCGCAGTGACTCAAATTCCGAGCGACGCGGGCTCCTGGATCTTGATCTCAACGTGGCTCCTCTCCCAGAGGTTGCGTGA 588 0.631 MAPRDRTTALAGPGPSPAQANKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAARDFRGAKAKTNFPTPSELLVNNHSSSNNNSARSPSQSSTLDSSSPPPPPPLLDLTLTPLTASVLPAARPVLFFDAFARADTVIAVGRRDTCGFGRPATDFRRSDSNSERRGLLDLDLNVAPLPEVA 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2226g00001 195 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Vium2226g00001 195 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 144 - -
Vium2226g00001 195 MobiDBLite consensus disorder prediction 83 109 - -
Vium2226g00001 195 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Vium2226g00001 195 PRINTS Ethylene responsive element binding protein signature 48 64 IPR001471 GO:0003700|GO:0006355
Vium2226g00001 195 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Vium2226g00001 195 MobiDBLite consensus disorder prediction 1 29 - -
Vium2226g00001 195 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Vium2226g00001 195 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Vium2226g00001 195 FunFam Ethylene-responsive transcription factor 2 25 83 - -
Vium2226g00001 195 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Vium2226g00001 195 Pfam AP2 domain 25 74 IPR001471 GO:0003700|GO:0006355
Vium2226g00001 195 MobiDBLite consensus disorder prediction 77 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2226g00001 Vium-Chr2226 8836 9868 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2226g00001 9 143 AP2-EREBP Transcription Factor Family AT3G15210 61.039 3.89e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium2226g00001 AP2 6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2226g00001 K09286 - gmx:100813652 248.825