Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2225g00007 ATGTCGGCAGCGTCGCCGTCAGCGGCGGCATCTCCACCACCACAAACACCACCCTCCTCCAACACTAGTCCCTCACCGTCCAACGCCACCACTCCTCCGCTGCAACAAACCCCTTCTTCCACTTCTCCGCCACAACAAGCAGAATCTCCGCCTCCGCTAACCCCATCTCCGGCGGCTCCGCCGCCTGCTCCGCCGTCACCACCACCTAGTTCTTCACCTCCCCCAGTGTCTGGAACACCTCCTCCATCAGTCACTCCATCATCACCACCTCCATCTTCGCCGCAGCCATCTCCTCCACCGCCACCCCCTCCATCAGTCCCTCCATCATCATCACCGCCATCTTCGCCGCAGCCATCTCCTCCACCGCCGCCTTCTCCTGATGCACCGGCACCGGTGCCACCGAGCTCTCCACCGCCACCACCACCATCAGCACCAGTGCCATCAAGAAGCCCTCCGCCACCGCCACCACCATCAAACCCTCCTAATAGCTCATCTCCACTACCACCGCCACAACCCTCACCATCAGCTCCCCCACCTAACAACACCCAAACACCGCCGCCGCACCGAAATTCACCACCACCTCCGGCCACCACGTTGCCACCAGCCTCGCCACCACGAAATTCACCATCTCCTCCGGCTTCACCGCCCCCTAGAAACTCAACTAGGTCATCACCGCCGCCTCCGGCAGCGAGGTCATCGCCGCCTCCAGCACCTGAGCCATCCAACCCACCTTCTAGGAGTAGTCCTCCTCCCACACCAAGTTCGTCCCTAGCTCCCCCTTCAAATTCTACGCCAAGTTCATCACCACCTTTAGTTACTCAATTGACCCCGCCACCGCCATCCCCGTCAAAAGTTTCATCGCCCCCATCCCCTACTCCGAACCCGACAGCAGATGCAGGCTCTCCTGGAGGTAGTATCAGCACTGTTGGTGTAGTAGCTATTGGTGTGGTAGCTGGATTTCTGCTTCTTGGCTTCATTGGTGTTCTTATATGGTGCATGAGAAGGCAAAAGAGAAAGACTCCTGTGAATGGTGGTTATGTCATGCCATCCACTCTTGCCTCCTCTCCTGAATCAGATTCATCGTTTTTTAAGACACACTCTTCAGCTCCTCTTGTGCAAAGTGGCTCTGGCAGTGATGTTGTGTACACACCATCTGATCCTGGTGGACTAGGCCACTCAAGGTCATGGTTTTCATATGAAGAACTGATGAAGGCCACAAATGGTTTCTCAAGTCAAAATCTTTTGGGTGAGGGAGGGTTTGGTTTTGTGTATAAAGGGTCACTTCCAGATGGGAGAGAGGTAGCAGTTAAGCAACTACAGATTGCAGGAAGTCAAGGAAAGAGAGAATTCAAAGCTGAAGTGGAAATTATCAGTCGTATACATCATCGCCATTTGGTTTCTTTAGTGGGATACTGCATTGAAGACAGCAGAAGACTACTTGTCTATGACTACGTTCCTAACAATAACCTTTACTTTCATCTACATGGGGAAAACCAGCCTGTGCTAGAATGGGCAAACCGTGTCAAAATTGCAGCTGGTGCAGCCCGTGGACTAGCTTATCTCCATGAAGACTGCAACCCTCGGATCATTCACAGGGATATCAAGTCGTCAAACATTCTTTTAGATTTCAATTATGAAGCTAAGGTCTCAGATTTTGGGCTAGCCAAATTAGCTCTTGATGCAAATACGCATATTACCACGCGTGTCATGGGAACTTTTGGGTATGTTGCCCCTGAATATGCTTCAAGTGGTAAATTGACTGAGAAGTCTGATGTATATTCTTTTGGAGTCGTGCTTTTGGAGCTAATTACCGGCCGGAAGCCGGTAGATGTATCCCAACCTTTGGGAGATGAAAGCCTGGTTGAATGGGCTCGGCCTTTACTAAGTCATTCAATTGATACTGAGGAATTCAGTAGTTTGGCAGATCCAAGGCTAGAAAAGAATTACATTGAGAGTGAATTGTATTGCATGATTGAGGTTGCTGCAGCTTGTGTGCGGCATTCAGCTTCAAAGAGACCTCGCATGGGACAGGTTGTTAGAGCTTTTGATAGCTTAGGAGGTTCTGATCTAACTAATGGAATGCAACTTGGGGAAAGTGAGGTGTTTGACTCTGCACAACAATCTGAAGAGATAAGATTATTTCGGAGAATGGCATTTGGTAGTCAAAATTATAGCACAGATTTCTTTAGCCGTGCTAGTTTGAATCCATGA 2211 0.5061 MSAASPSAAASPPPQTPPSSNTSPSPSNATTPPLQQTPSSTSPPQQAESPPPLTPSPAAPPPAPPSPPPSSSPPPVSGTPPPSVTPSSPPPSSPQPSPPPPPPPSVPPSSSPPSSPQPSPPPPPSPDAPAPVPPSSPPPPPPSAPVPSRSPPPPPPPSNPPNSSSPLPPPQPSPSAPPPNNTQTPPPHRNSPPPPATTLPPASPPRNSPSPPASPPPRNSTRSSPPPPAARSSPPPAPEPSNPPSRSSPPPTPSSSLAPPSNSTPSSSPPLVTQLTPPPPSPSKVSSPPSPTPNPTADAGSPGGSISTVGVVAIGVVAGFLLLGFIGVLIWCMRRQKRKTPVNGGYVMPSTLASSPESDSSFFKTHSSAPLVQSGSGSDVVYTPSDPGGLGHSRSWFSYEELMKATNGFSSQNLLGEGGFGFVYKGSLPDGREVAVKQLQIAGSQGKREFKAEVEIISRIHHRHLVSLVGYCIEDSRRLLVYDYVPNNNLYFHLHGENQPVLEWANRVKIAAGAARGLAYLHEDCNPRIIHRDIKSSNILLDFNYEAKVSDFGLAKLALDANTHITTRVMGTFGYVAPEYASSGKLTEKSDVYSFGVVLLELITGRKPVDVSQPLGDESLVEWARPLLSHSIDTEEFSSLADPRLEKNYIESELYCMIEVAAACVRHSASKRPRMGQVVRAFDSLGGSDLTNGMQLGESEVFDSAQQSEEIRLFRRMAFGSQNYSTDFFSRASLNP 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2225g00007 736 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 320 717 IPR047117 -
Vium2225g00007 736 Gene3D Transferase(Phosphotransferase) domain 1 485 695 - -
Vium2225g00007 736 PRINTS Pistil-specific extensin-like signature 194 215 IPR003882 -
Vium2225g00007 736 PRINTS Pistil-specific extensin-like signature 51 74 IPR003882 -
Vium2225g00007 736 PRINTS Pistil-specific extensin-like signature 86 104 IPR003882 -
Vium2225g00007 736 Gene3D Phosphorylase Kinase; domain 1 389 484 - -
Vium2225g00007 736 ProSitePatterns Protein kinases ATP-binding region signature. 415 437 IPR017441 GO:0005524
Vium2225g00007 736 Pfam Protein tyrosine and serine/threonine kinase 412 681 IPR001245 GO:0004672|GO:0006468
Vium2225g00007 736 FunFam Proline-rich receptor-like protein kinase PERK8 382 484 - -
Vium2225g00007 736 ProSiteProfiles Protein kinase domain profile. 409 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2225g00007 736 SUPERFAMILY Protein kinase-like (PK-like) 391 680 IPR011009 -
Vium2225g00007 736 MobiDBLite consensus disorder prediction 44 296 - -
Vium2225g00007 736 FunFam proline-rich receptor-like protein kinase PERK8 485 696 - -
Vium2225g00007 736 MobiDBLite consensus disorder prediction 22 43 - -
Vium2225g00007 736 CDD STKc_IRAK 415 685 - -
Vium2225g00007 736 ProSitePatterns Serine/Threonine protein kinases active-site signature. 529 541 IPR008271 GO:0004672|GO:0006468
Vium2225g00007 736 SMART serkin_6 409 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2225g00007 736 MobiDBLite consensus disorder prediction 1 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2225g00007 Vium-Chr2225 67395 71837 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2225g00007 129 728 Trihelix Transcription Factor Family AT1G70460 47.188 8.72e-163 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vium2225g00007 PK_Tyr_Ser-Thr 7.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2225g00007 - - vun:114173712 828.165