Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2222g00008 ATGAATAACTGGTTGGGATTCTCTCTCACTCCCCATTTGAGGATTGATGAAGAATTTGGGAGAGAAAACCAAGAGCGTGGAGAAGAAGGAGAAGGAGGAGGAGGGTATCATCCTCGTCCTTCTTCTCACCCTCACTTGTCTGTTATGCCTTTGCGCTCTGATGGCTCTCTCTGTGTTGCTGATTCCTTCAGTCACTCTGCCACTCCTCAAGAATGGAGGTATGATAGTGCAATAGGTGGAGGGAATTCCAATGAAAAAGGTCCAAAGCTTGAGGACTTTTTGGGCTGCTACTCAAACTCCCCCAATAAAGTCTTTTGTCAAGATTCTCAACATGACCAAAACCAAAGCCAGAGCAATGTTTCCAAAATCAATGTTAATGTGGCACCAAACTTTTGCACCAATGCTGATATTGAAACTGGGGATTGCCTCACAAACCCTTCTTCCTTGCTTCAATCTTTCCATGCATACAATGATAACCCACATGCCCTTATCCCGACCAATGGCATGTACAAGTCCTGGTTGGCGCAAACTCAGTTTTCTGATGTAAAGCCTTCAACTGAGGCAAATGGGTGTAATTTCCAATCACTGTCTCTCACTATGAGCCCCACTGTGCAAAATGGAGTGGGGGCAATTTCCTCTGTTCAAGCTCTTGATGACAATAGGAAACGGGCCATGGCTAAATCTCATGCTAGAGAACCAGTTCCTCGCAAATCCATTGACACTTTTGGGCAGAGAACCTCTCAATACCGTGGTGTTACAAGGCATAGATTGACTGGGAGATATGAGGCCCATTTGTGGGACAACAGTTGCAGAAAGGAAGGGCAGACAAGGAAAGGAAGGCAAGTCTACCTTGGTGGTTATGATAAGGAAGAAAAAGCAGCAAGGGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAACTTGAAGAGATGAAGCACATGACCAGGCAAGAATTTGTCGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGGGCATCTGTGTATAGAGGTGTCACAAGGCACCATCAACATGGAAGGTGGCAGGCCCGAATTGGAAGGGTTGCAGGAAACAAGGACTTGTATCTTGGTACATTTAGCACTCAAGAAGAAGCTGCCGAAGCATACGATATTGCAGCAATCAAGTTCAGAGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTATGATGTGAAGAGAATCTGCTCAAGTTCCACACTCATTGCAGGAGATCTTGCAAAGCGGTCCCCCAAAAAAGAGTCACCAGCTTCTGTTGCTGCGGATGACATCAACACAAGCAGTTCTTCCGTGCCATCTCAGCCAACTTCTTTGGCAATAACCGATGCTGAACATTCTGATGAGTTGTCCAACATGATGTGGAATGCCAACAACAGCGATGAACAAGCACACAACGAGAGTGTTAACATGAACAACGTGAGTGAATCATCACAGCAAGTTTCTCCAAGCAACAACAAGGTTGGTTTGAACCATGAAAGTCCTCCCAAGTGTTCTGTGGGGCTACCGAACGAGTTTGGAGTGAGTGGAGCAGATTATGGACATGGGTACTTCACCCTGGAAGGACCAAAATATGATGATGAGGATGATGGGAACACTGAAAACGACCACATGAGCAGCAACAGGCTTGGAAACATGGGACTTGTTAATCAAGTTCCGATGTTTGCTTTGTGGAATGAATGA 1746 0.4525 MNNWLGFSLTPHLRIDEEFGRENQERGEEGEGGGGYHPRPSSHPHLSVMPLRSDGSLCVADSFSHSATPQEWRYDSAIGGGNSNEKGPKLEDFLGCYSNSPNKVFCQDSQHDQNQSQSNVSKINVNVAPNFCTNADIETGDCLTNPSSLLQSFHAYNDNPHALIPTNGMYKSWLAQTQFSDVKPSTEANGCNFQSLSLTMSPTVQNGVGAISSVQALDDNRKRAMAKSHAREPVPRKSIDTFGQRTSQYRGVTRHRLTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKKESPASVAADDINTSSSSVPSQPTSLAITDAEHSDELSNMMWNANNSDEQAHNESVNMNNVSESSQQVSPSNNKVGLNHESPPKCSVGLPNEFGVSGADYGHGYFTLEGPKYDDEDDGNTENDHMSSNRLGNMGLVNQVPMFALWNE 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2222g00008 581 SUPERFAMILY DNA-binding domain 247 316 IPR016177 GO:0003677
Vium2222g00008 581 CDD AP2 349 410 IPR001471 GO:0003700|GO:0006355
Vium2222g00008 581 MobiDBLite consensus disorder prediction 15 50 - -
Vium2222g00008 581 SUPERFAMILY DNA-binding domain 349 410 IPR016177 GO:0003677
Vium2222g00008 581 ProSiteProfiles AP2/ERF domain profile. 248 314 IPR001471 GO:0003700|GO:0006355
Vium2222g00008 581 PRINTS Ethylene responsive element binding protein signature 390 410 IPR001471 GO:0003700|GO:0006355
Vium2222g00008 581 PRINTS Ethylene responsive element binding protein signature 249 260 IPR001471 GO:0003700|GO:0006355
Vium2222g00008 581 Pfam AP2 domain 349 400 IPR001471 GO:0003700|GO:0006355
Vium2222g00008 581 Pfam AP2 domain 248 306 IPR001471 GO:0003700|GO:0006355
Vium2222g00008 581 MobiDBLite consensus disorder prediction 428 459 - -
Vium2222g00008 581 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 85 491 - -
Vium2222g00008 581 FunFam AP2-like ethylene-responsive transcription factor 349 410 - -
Vium2222g00008 581 MobiDBLite consensus disorder prediction 546 565 - -
Vium2222g00008 581 FunFam AP2-like ethylene-responsive transcription factor ANT 247 316 - -
Vium2222g00008 581 MobiDBLite consensus disorder prediction 442 459 - -
Vium2222g00008 581 MobiDBLite consensus disorder prediction 483 512 - -
Vium2222g00008 581 CDD AP2 247 316 IPR001471 GO:0003700|GO:0006355
Vium2222g00008 581 Gene3D AP2/ERF domain 247 316 IPR036955 GO:0003700|GO:0006355
Vium2222g00008 581 Gene3D AP2/ERF domain 350 410 IPR036955 GO:0003700|GO:0006355
Vium2222g00008 581 ProSiteProfiles AP2/ERF domain profile. 350 408 IPR001471 GO:0003700|GO:0006355
Vium2222g00008 581 SMART rav1_2 248 320 IPR001471 GO:0003700|GO:0006355
Vium2222g00008 581 SMART rav1_2 350 414 IPR001471 GO:0003700|GO:0006355
Vium2222g00008 581 MobiDBLite consensus disorder prediction 15 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2222g00008 Vium-Chr2222 64529 68465 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2222g00008 1 433 AP2-EREBP Transcription Factor Family AT1G72570 51.158 2.88e-138 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vium2222g00008 AP2 3.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2222g00008 K09285 - gmx:100805489 958.747