Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2222g00007 ATGAATAACTGGTTGGGATTCTCTCTCACTCCCCATTTGAGGATTGATGAAGAATTTGGGAGAGAAAACCAAGAGCGTGGAGAAGAAGGAGAAGGAGGAGGAGGGTATCATCCTCGTCCTTCTTCTCACCCTCACTTGTCTGTTATGCCTTTGCGCTCTGATGGCTCTCTCTGTGTTGCTGATTCCTTCAGTCACTCTGCCACTCCTCAAGAATGGAGGTATGATAGTGCAATAGGTGGAGGGAATTCCAATGAAAAAGGTCCAAAGCTTGAGGACTTTTTGGGCTGCTACTCAAACTCCCCCAATAAAGTCTTTTGTCAAGATTCTCAACATGACCAAAACCAAAGCCAGAGCAATGTTTCCAAAATCAATGTTAATGTGGCACCAAACTTTTGCACCAATGCTGATATTGAAACTGGGGATTGCCTCACAAACCCTTCTTCCTTGCTTCAATCTTTCCATGCATACAATGATAACCCACATGCCCTTATCCCGACCAATGGCATGTACAAGTCCTGGTTGGCGCAAACTCAGTTTTCTGATGTAAAGCCTTCAACTGAGGCAAATGGGTGTAATTTCCAATCACTGTCTCTCACTATGAGCCCCACTGTGCAAAATGGAGTGGGGGCAATTTCCTCTGTTCAAGCTCTTGATGACAATAGGAAACGGGCCATGGCTAAATCTCATGCTAGAGAACCAGTTCCTCGCAAATCCATTGACACTTTTGGGCAGAGAACCTCTCAATACCGTGGTGTTACAAGGCATAGATTGACTGGGAGATATGAGGCCCATTTGTGGGACAACAGTTGCAGAAAGGAAGGGCAGACAAGGAAAGGAAGGCAAGGTGGTTATGATAAGGAAGAAAAAGCAGCAAGGGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAACTTGAAGAGATGAAGCACATGACCAGGCAAGAATTTGTCGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGGGCATCTGTGTATAGAGGTGTCACAAGGCACCATCAACATGGAAGGTGGCAGGCCCGAATTGGAAGGGTTGCAGGAAACAAGGACTTGTATCTTGGTACATTTAGCACTCAAGAAGAAGCTGCCGAAGCATACGATATTGCAGCAATCAAGTTCAGAGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTATGATGTGAAGAGAATCTGCTCAAGTTCCACACTCATTGCAGGAGATCTTGCAAAGCGGTCCCCCAAAAAAGAGTCACCAGCTTCTGTTGCTGCGGATGACATCAACACAAGCAGTTCTTCCGTGCCATCTCAGCCAACTTCTTTGGCAATAACCGATGCTGAACATTCTGATGAGTTGTCCAACATGATGTGGAATGCCAACAACAGCGATGAACAAGCACACAACGAGAGTGTTAACATGAACAACGTGAGTGAATCATCACAGCAAGTTTCTCCAAGCAACAACAAGGTTGGTTTGAACCATGAAAGTCCTCCCAAGTGTTCTGTGGGGCTACCGAACGAGTTTGGAGTGAGTGGAGCAGATTATGGACATGGGTACTTCACCCTGGAAGGACCAAAATATGATGATGAGGATGATGGGAACACTGAAAACGACCACATGAGCAGCAACAGGCTTGGAAACATGGGACTTGTTAATCAAGTTCCGATGTTTGCTTTGTGGAATGAATGA 1737 0.4525 MNNWLGFSLTPHLRIDEEFGRENQERGEEGEGGGGYHPRPSSHPHLSVMPLRSDGSLCVADSFSHSATPQEWRYDSAIGGGNSNEKGPKLEDFLGCYSNSPNKVFCQDSQHDQNQSQSNVSKINVNVAPNFCTNADIETGDCLTNPSSLLQSFHAYNDNPHALIPTNGMYKSWLAQTQFSDVKPSTEANGCNFQSLSLTMSPTVQNGVGAISSVQALDDNRKRAMAKSHAREPVPRKSIDTFGQRTSQYRGVTRHRLTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKKESPASVAADDINTSSSSVPSQPTSLAITDAEHSDELSNMMWNANNSDEQAHNESVNMNNVSESSQQVSPSNNKVGLNHESPPKCSVGLPNEFGVSGADYGHGYFTLEGPKYDDEDDGNTENDHMSSNRLGNMGLVNQVPMFALWNE 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2222g00007 578 PRINTS Ethylene responsive element binding protein signature 387 407 IPR001471 GO:0003700|GO:0006355
Vium2222g00007 578 PRINTS Ethylene responsive element binding protein signature 249 260 IPR001471 GO:0003700|GO:0006355
Vium2222g00007 578 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 85 488 - -
Vium2222g00007 578 MobiDBLite consensus disorder prediction 15 50 - -
Vium2222g00007 578 Gene3D AP2/ERF domain 247 313 IPR036955 GO:0003700|GO:0006355
Vium2222g00007 578 Gene3D AP2/ERF domain 347 407 IPR036955 GO:0003700|GO:0006355
Vium2222g00007 578 SMART rav1_2 248 317 IPR001471 GO:0003700|GO:0006355
Vium2222g00007 578 SMART rav1_2 347 411 IPR001471 GO:0003700|GO:0006355
Vium2222g00007 578 MobiDBLite consensus disorder prediction 543 562 - -
Vium2222g00007 578 FunFam AP2-like ethylene-responsive transcription factor 346 407 - -
Vium2222g00007 578 FunFam AP2-like ethylene-responsive transcription factor ANT 247 313 - -
Vium2222g00007 578 MobiDBLite consensus disorder prediction 480 509 - -
Vium2222g00007 578 ProSiteProfiles AP2/ERF domain profile. 248 311 IPR001471 GO:0003700|GO:0006355
Vium2222g00007 578 ProSiteProfiles AP2/ERF domain profile. 347 405 IPR001471 GO:0003700|GO:0006355
Vium2222g00007 578 MobiDBLite consensus disorder prediction 425 456 - -
Vium2222g00007 578 SUPERFAMILY DNA-binding domain 346 407 IPR016177 GO:0003677
Vium2222g00007 578 Pfam AP2 domain 346 397 IPR001471 GO:0003700|GO:0006355
Vium2222g00007 578 Pfam AP2 domain 248 303 IPR001471 GO:0003700|GO:0006355
Vium2222g00007 578 SUPERFAMILY DNA-binding domain 247 313 IPR016177 GO:0003677
Vium2222g00007 578 CDD AP2 346 407 IPR001471 GO:0003700|GO:0006355
Vium2222g00007 578 MobiDBLite consensus disorder prediction 439 456 - -
Vium2222g00007 578 CDD AP2 247 313 IPR001471 GO:0003700|GO:0006355
Vium2222g00007 578 MobiDBLite consensus disorder prediction 15 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2222g00007 Vium-Chr2222 64529 68467 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2222g00007 1 430 AP2-EREBP Transcription Factor Family AT1G72570 50.526 8.26e-134 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vium2222g00007 AP2 8.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2222g00007 K09285 - gmx:100805489 947.577