Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2222g00006 ATGAATAACTGGTTGGGATTCTCTCTCACTCCCCATTTGAGGATTGATGAAGAATTTGGGAGAGAAAACCAAGAGCGTGGAGAAGAAGGAGAAGGAGGAGGAGGGTATCATCCTCGTCCTTCTTCTCACCCTCACTTGTCTGTTATGCCTTTGCGCTCTGATGGCTCTCTCTGTGTTGCTGATTCCTTCAGTCACTCTGCCACTCCTCAAGAATGGAGGTATGATAGTGCAATAGGTGGAGGGAATTCCAATGAAAAAGGTCCAAAGCTTGAGGACTTTTTGGGCTGCTACTCAAACTCCCCCAATAAAGTCTTTTGTCAAGATTCTCAACATGACCAAAACCAAAGCCAGAGCAATGTTTCCAAAATCAATGTTAATGTGGCACCAAACTTTTGCACCAATGCTGATATTGAAACTGGGGATTGCCTCACAAACCCTTCTTCCTTGCTTCAATCTTTCCATGCATACAATGATAACCCACATGCCCTTATCCCGACCAATGGCATGTACAAGTCCTGGTTGGCGCAAACTCAGTTTTCTGATGTAAAGCCTTCAACTGAGGCAAATGGGTGTAATTTCCAATCACTGTCTCTCACTATGAGCCCCACTGTGCAAAATGGAGTGGGGGCAATTTCCTCTGTTCAAGCTCTTGATGACAATAGGAAACGGGCCATGGCTAAATCTCATGCTAGAGAACCAGTTCCTCGCAAATCCATTGACACTTTTGGGCAGAGAACCTCTCAATACCGTGGTGTTACAAGGCATAGATTGACTGGGAGATATGAGGCCCATTTGTGGGACAACAGTTGCAGAAAGGAAGGGCAGACAAGGAAAGGAAGGCAAGTCTACCTTGGTGGTTATGATAAGGAAGAAAAAGCAGCAAGGGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAACTTGAAGAGATGAAGCACATGACCAGGCAAGAATTTGTCGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGGGCATCTGTGTATAGAGGTGTCACAAGGTATGGACTAAAGCACCATCAACATGGAAGGTGGCAGGCCCGAATTGGAAGGGTTGCAGGAAACAAGGACTTGTATCTTGGTACATTTAGCACTCAAGAAGAAGCTGCCGAAGCATACGATATTGCAGCAATCAAGTTCAGAGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTATGATGTGAAGAGAATCTGCTCAAGTTCCACACTCATTGCAGGAGATCTTGCAAAGCGGTCCCCCAAAAAAGAGTCACCAGCTTCTGTTGCTGCGGATGACATCAACACAAGCAGTTCTTCCGTGCCATCTCAGCCAACTTCTTTGGCAATAACCGATGCTGAACATTCTGATGAGTTGTCCAACATGATGTGGAATGCCAACAACAGCGATGAACAAGCACACAACGAGAGTGTTAACATGAACAACGTGAGTGAATCATCACAGCAAGTTTCTCCAAGCAACAACAAGGTTGGTTTGAACCATGAAAGTCCTCCCAAGTGTTCTGTGGGGCTACCGAACGAGTTTGGAGTGAGTGGAGCAGATTATGGACATGGGTACTTCACCCTGGAAGGACCAAAATATGATGATGAGGATGATGGGAACACTGAAAACGACCACATGAGCAGCAACAGGCTTGGAAACATGGGACTTGTTAATCAAGTTCCGATGTTTGCTTTGTGGAATGAATGA 1758 0.4516 MNNWLGFSLTPHLRIDEEFGRENQERGEEGEGGGGYHPRPSSHPHLSVMPLRSDGSLCVADSFSHSATPQEWRYDSAIGGGNSNEKGPKLEDFLGCYSNSPNKVFCQDSQHDQNQSQSNVSKINVNVAPNFCTNADIETGDCLTNPSSLLQSFHAYNDNPHALIPTNGMYKSWLAQTQFSDVKPSTEANGCNFQSLSLTMSPTVQNGVGAISSVQALDDNRKRAMAKSHAREPVPRKSIDTFGQRTSQYRGVTRHRLTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRYGLKHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKKESPASVAADDINTSSSSVPSQPTSLAITDAEHSDELSNMMWNANNSDEQAHNESVNMNNVSESSQQVSPSNNKVGLNHESPPKCSVGLPNEFGVSGADYGHGYFTLEGPKYDDEDDGNTENDHMSSNRLGNMGLVNQVPMFALWNE 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2222g00006 585 Gene3D AP2/ERF domain 247 316 IPR036955 GO:0003700|GO:0006355
Vium2222g00006 585 Gene3D AP2/ERF domain 350 414 IPR036955 GO:0003700|GO:0006355
Vium2222g00006 585 MobiDBLite consensus disorder prediction 15 50 - -
Vium2222g00006 585 ProSiteProfiles AP2/ERF domain profile. 248 314 IPR001471 GO:0003700|GO:0006355
Vium2222g00006 585 FunFam AP2-like ethylene-responsive transcription factor 349 414 - -
Vium2222g00006 585 MobiDBLite consensus disorder prediction 432 463 - -
Vium2222g00006 585 SUPERFAMILY DNA-binding domain 350 414 IPR016177 GO:0003677
Vium2222g00006 585 FunFam AP2-like ethylene-responsive transcription factor ANT 247 316 - -
Vium2222g00006 585 Pfam AP2 domain 350 404 IPR001471 GO:0003700|GO:0006355
Vium2222g00006 585 Pfam AP2 domain 248 306 IPR001471 GO:0003700|GO:0006355
Vium2222g00006 585 SUPERFAMILY DNA-binding domain 247 316 IPR016177 GO:0003677
Vium2222g00006 585 PRINTS Ethylene responsive element binding protein signature 249 260 IPR001471 GO:0003700|GO:0006355
Vium2222g00006 585 PRINTS Ethylene responsive element binding protein signature 394 414 IPR001471 GO:0003700|GO:0006355
Vium2222g00006 585 MobiDBLite consensus disorder prediction 446 463 - -
Vium2222g00006 585 MobiDBLite consensus disorder prediction 487 516 - -
Vium2222g00006 585 CDD AP2 247 316 IPR001471 GO:0003700|GO:0006355
Vium2222g00006 585 SMART rav1_2 248 320 IPR001471 GO:0003700|GO:0006355
Vium2222g00006 585 SMART rav1_2 350 418 IPR001471 GO:0003700|GO:0006355
Vium2222g00006 585 MobiDBLite consensus disorder prediction 15 33 - -
Vium2222g00006 585 CDD AP2 349 414 IPR001471 GO:0003700|GO:0006355
Vium2222g00006 585 ProSiteProfiles AP2/ERF domain profile. 350 412 IPR001471 GO:0003700|GO:0006355
Vium2222g00006 585 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 85 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2222g00006 Vium-Chr2222 64529 68468 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2222g00006 1 437 AP2-EREBP Transcription Factor Family AT1G72570 50.731 7.63e-136 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vium2222g00006 AP2 3.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2222g00006 K09285 - gmx:100805489 952.97