Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2222g00005 ATGAATAACTGGTTGGGATTCTCTCTCACTCCCCATTTGAGGATTGATGAAGAATTTGGGAGAGAAAACCAAGAGCGTGGAGAAGAAGGAGAAGGAGGAGGAGGGTATCATCCTCGTCCTTCTTCTCACCCTCACTTGTCTGTTATGCCTTTGCGCTCTGATGGCTCTCTCTGTGTTGCTGATTCCTTCAGTCACTCTGCCACTCCTCAAGAATGGAGGTATGATAGTGCAATAGGTGGAGGGAATTCCAATGAAAAAGGTCCAAAGCTTGAGGACTTTTTGGGCTGCTACTCAAACTCCCCCAATAAAGTCTTTTGTCAAGATTCTCAACATGACCAAAACCAAAGCCAGAGCAATGTTTCCAAAATCAATGTTAATGTGGCACCAAACTTTTGCACCAATGCTGATATTGAAACTGGGGATTGCCTCACAAACCCTTCTTCCTTGCTTCAATCTTTCCATGCATACAATGATAACCCACATGCCCTTATCCCGACCAATGGCATGTACAAGTCCTGGTTGGCGCAAACTCAGTTTTCTGATGTAAAGCCTTCAACTGAGGCAAATGGGTGTAATTTCCAATCACTGTCTCTCACTATGAGCCCCACTGTGCAAAATGGAGTGGGGGCAATTTCCTCTGTTCAAGCTCTTGATGACAATAGGAAACGGGCCATGGCTAAATCTCATGCTAGAGAACCAGTTCCTCGCAAATCCATTGACACTTTTGGGCAGAGAACCTCTCAATACCGTGGTGTTACAAGGCATAGATTGACTGGGAGATATGAGGCCCATTTGTGGGACAACAGTTGCAGAAAGGAAGGGCAGACAAGGAAAGGAAGGCAAGGTGGTTATGATAAGGAAGAAAAAGCAGCAAGGGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAACTTGAAGAGATGAAGCACATGACCAGGCAAGAATTTGTCGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGGGCATCTGTGTATAGAGGTGTCACAAGGTATGGACTAAAGCACCATCAACATGGAAGGTGGCAGGCCCGAATTGGAAGGGTTGCAGGAAACAAGGACTTGTATCTTGGTACATTTAGCACTCAAGAAGAAGCTGCCGAAGCATACGATATTGCAGCAATCAAGTTCAGAGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTATGATGTGAAGAGAATCTGCTCAAGTTCCACACTCATTGCAGGAGATCTTGCAAAGCGGTCCCCCAAAAAAGAGTCACCAGCTTCTGTTGCTGCGGATGACATCAACACAAGCAGTTCTTCCGTGCCATCTCAGCCAACTTCTTTGGCAATAACCGATGCTGAACATTCTGATGAGTTGTCCAACATGATGTGGAATGCCAACAACAGCGATGAACAAGCACACAACGAGAGTGTTAACATGAACAACGTGAGTGAATCATCACAGCAAGTTTCTCCAAGCAACAACAAGGTTGGTTTGAACCATGAAAGTCCTCCCAAGTGTTCTGTGGGGCTACCGAACGAGTTTGGAGTGAGTGGAGCAGATTATGGACATGGGTACTTCACCCTGGAAGGACCAAAATATGATGATGAGGATGATGGGAACACTGAAAACGACCACATGAGCAGCAACAGGCTTGGAAACATGGGACTTGTTAATCAAGTTCCGATGTTTGCTTTGTGGAATGAATGA 1749 0.4517 MNNWLGFSLTPHLRIDEEFGRENQERGEEGEGGGGYHPRPSSHPHLSVMPLRSDGSLCVADSFSHSATPQEWRYDSAIGGGNSNEKGPKLEDFLGCYSNSPNKVFCQDSQHDQNQSQSNVSKINVNVAPNFCTNADIETGDCLTNPSSLLQSFHAYNDNPHALIPTNGMYKSWLAQTQFSDVKPSTEANGCNFQSLSLTMSPTVQNGVGAISSVQALDDNRKRAMAKSHAREPVPRKSIDTFGQRTSQYRGVTRHRLTGRYEAHLWDNSCRKEGQTRKGRQGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRYGLKHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKKESPASVAADDINTSSSSVPSQPTSLAITDAEHSDELSNMMWNANNSDEQAHNESVNMNNVSESSQQVSPSNNKVGLNHESPPKCSVGLPNEFGVSGADYGHGYFTLEGPKYDDEDDGNTENDHMSSNRLGNMGLVNQVPMFALWNE 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2222g00005 582 PRINTS Ethylene responsive element binding protein signature 391 411 IPR001471 GO:0003700|GO:0006355
Vium2222g00005 582 PRINTS Ethylene responsive element binding protein signature 249 260 IPR001471 GO:0003700|GO:0006355
Vium2222g00005 582 MobiDBLite consensus disorder prediction 15 50 - -
Vium2222g00005 582 Gene3D AP2/ERF domain 347 411 IPR036955 GO:0003700|GO:0006355
Vium2222g00005 582 Gene3D AP2/ERF domain 247 313 IPR036955 GO:0003700|GO:0006355
Vium2222g00005 582 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 85 492 - -
Vium2222g00005 582 FunFam AP2-like ethylene-responsive transcription factor ANT 247 313 - -
Vium2222g00005 582 SUPERFAMILY DNA-binding domain 347 411 IPR016177 GO:0003677
Vium2222g00005 582 ProSiteProfiles AP2/ERF domain profile. 347 409 IPR001471 GO:0003700|GO:0006355
Vium2222g00005 582 MobiDBLite consensus disorder prediction 484 513 - -
Vium2222g00005 582 FunFam AP2-like ethylene-responsive transcription factor 346 411 - -
Vium2222g00005 582 ProSiteProfiles AP2/ERF domain profile. 248 311 IPR001471 GO:0003700|GO:0006355
Vium2222g00005 582 MobiDBLite consensus disorder prediction 429 460 - -
Vium2222g00005 582 Pfam AP2 domain 248 303 IPR001471 GO:0003700|GO:0006355
Vium2222g00005 582 Pfam AP2 domain 347 401 IPR001471 GO:0003700|GO:0006355
Vium2222g00005 582 CDD AP2 346 411 IPR001471 GO:0003700|GO:0006355
Vium2222g00005 582 SUPERFAMILY DNA-binding domain 247 313 IPR016177 GO:0003677
Vium2222g00005 582 MobiDBLite consensus disorder prediction 443 460 - -
Vium2222g00005 582 CDD AP2 247 313 IPR001471 GO:0003700|GO:0006355
Vium2222g00005 582 SMART rav1_2 347 415 IPR001471 GO:0003700|GO:0006355
Vium2222g00005 582 SMART rav1_2 248 317 IPR001471 GO:0003700|GO:0006355
Vium2222g00005 582 MobiDBLite consensus disorder prediction 15 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2222g00005 Vium-Chr2222 64529 68470 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2222g00005 1 434 AP2-EREBP Transcription Factor Family AT1G72570 50.104 1.70e-131 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vium2222g00005 AP2 3.8e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2222g00005 K09285 - gmx:100805489 941.799