Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2222g00003 ATGATGAGTGCAACTGCAACTGCCAGAAATAGGTCTCCTTTCACACCATCTCAGTGGCAAGAGCTTGAGCAACAAGCTCTTGTTTTCAAATACATGGTCACAGGAACACCTATTCCACCAGATCTCATCTACTCGATTAAAAGAAGTCTTGACTCTTCAATTTCTTCCAGACTCTTTCCACATCATCCAATTGGGTGGGGATGTTTTGAAATGGGATTTGGCAGAAAAGTAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGCTCAAAGGAGGCATATCCAGACTCAAAGTACTGTGAAAGACACATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGTTTCTTCAGCAACAAGCACCGCCACTAACACCTCTCAAACAATCCCATCTTATACCAGAAACCTTTCCTTGGCAAACCCCACCATAACTTCACCCTCTTTCCCTTTCTCTCCTTTGCCCTCTTCTATGCCCTGTGACTCCCAACCCTTTTCCCAATCCTACCAAAACCCTTCTCTCAATCCCTTTTTCTATGCCCAATCAACCTCCTCCAGACCCCCAGATTCTGATTTTTCACCTCAAGATGCCACTACCCACCAGCTATTCATGGACTCTGCTTCTTATTCTCATGATGAGAAGGATTACAGGCATGTTCATGGAATAAGGGAAGATGTGGATGAAAGAGCTTTCTTCCCGGAAGCTTCAGGATCAGCGAGGAACTATTCTGACTCGTATCAGCCGCTATCAATGAGCACCTACAAGTCCTATTCAAACTCCAGCTTTCAGAACATCAATGATGGCACCAACCAAAGACAGCAAGAGCAACAACACTGCTTTGTTTTGGGGACTGACTTCAAATCAACGAGGCCAAGCAAAGAGAAAGAAGCTGAGACAACGAGCCAGAGACCCCTTCACCGTTTCTTTGGGGAGTGGCCACCAAAGAACACAGATTCCTGGCTAGATCTTGCTTCCAACTCCAGAATCCCAACCGATGAATGA 1020 0.4598 MMSATATARNRSPFTPSQWQELEQQALVFKYMVTGTPIPPDLIYSIKRSLDSSISSRLFPHHPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEVSSATSTATNTSQTIPSYTRNLSLANPTITSPSFPFSPLPSSMPCDSQPFSQSYQNPSLNPFFYAQSTSSRPPDSDFSPQDATTHQLFMDSASYSHDEKDYRHVHGIREDVDERAFFPEASGSARNYSDSYQPLSMSTYKSYSNSSFQNINDGTNQRQQEQQHCFVLGTDFKSTRPSKEKEAETTSQRPLHRFFGEWPPKNTDSWLDLASNSRIPTDE 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2222g00003 339 MobiDBLite consensus disorder prediction 325 339 - -
Vium2222g00003 339 MobiDBLite consensus disorder prediction 119 141 - -
Vium2222g00003 339 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vium2222g00003 339 MobiDBLite consensus disorder prediction 182 203 - -
Vium2222g00003 339 ProSiteProfiles WRC domain profile. 78 122 IPR014977 -
Vium2222g00003 339 PANTHER GROWTH-REGULATING FACTOR 5 12 325 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vium2222g00003 339 MobiDBLite consensus disorder prediction 294 308 - -
Vium2222g00003 339 MobiDBLite consensus disorder prediction 111 141 - -
Vium2222g00003 339 Pfam WRC 79 121 IPR014977 -
Vium2222g00003 339 Pfam QLQ 13 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vium2222g00003 339 MobiDBLite consensus disorder prediction 290 339 - -
Vium2222g00003 339 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2222g00003 Vium-Chr2222 37162 39312 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2222g00003 1 317 GRF Transcription Factor Family AT3G13960 36.729 2.16e-65 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vium2222g00003 WRC 1.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2222g00003 - - gmx:100806024 584.719