Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2221g00014 ATGCTGGTTCGGAGGAGGGTGATGAGTTGGAGAAGGGTGGCGAAGGCCCTGCAAGCTCTGGTAGCTCATGCTTTGCTTTTCTCTTTCACTCTTCTCCTTGTTCTCAAGCTTGACCATCTCCTTCCTGACTCATGGACATGGTGGAAAGTATTTTCTCCTCTATGGCTTTTTCATGCTGTGGTGGCACGAGGCAGGTTTTCCTTGCCTGCTCCTTCGATTCCTCACGATCGGCGATGGGCTCCTTTTCATTCACTCGTAGCAACTCCACTACTTGTTGCATTTGAGCTACTTCTTTGTATACATCTCGGGAGCAGTTATGAGATGAATTTAAGGATTGTCTTCATGCCCCTGGTATTTTTTGAAATGGTGGTTTTGTTTGATAACATCAGGATGTGTAGGGCTTTGATGCCCGGGGATGATGAAAATTTGACGGATGAAGCAGTCTGGGAAACTCTTCCTCACTTCTGGATTTCAATATCCATGGTCTTCTTAATTGCTGCCACAGTGTTCACCCTTCTAAAGATATGTGGTGATGTTGCTGCTCTAGGCTGGTGGGACTTATTTATTAACTATGGGATTGCACAGTGCTTTGCCTTTCTTGTTTGTACTAAGTGGCATAATCCAACTATACATGGAGGCTGTCACATCACAGAACCATGTTCATCGTCAAATACCATAAGATACCTAGACATGAGTAGAGGAGGCTTAGTTACTTATGCGGATGAAGATAGGGAGCAAAATGGGTTCTGCAATCTGCAGGATATTGGTGGGCATATCATGAAAATTCCATTCATTGGTTTTCAAATACTTCTTTTTATGCATTTAGAGGGAACGCCATCCAGTGCAAAAAATCTGCAACATTGGGTCATTTTTTCGCCACTTTTTTTGTTGCAAGGAGCTGGGGTATTATTTGCTGCATATAGATTAATAGAGAAGATAGTTCTTTTACTCTACAGTGGAGATATTCCTGAAAGATACTCATCTATAGCATCAAAATCTCGTGAGTGCTTTGGGTTCTTTCGACATGGTTCAAGGTTACTTGGTTGGTGGTCAATAGATGAAGGAAGTAAAGAGGAAGAAGCTAGACTTTTTTTTTCTGGGAGTTCTGGGTATAATACTTTTACCCCTGATACAGTGAAGAAAATGCCTAGAGCAGATCTGGTTGAGGAGATTTGGAGATTACAAGCTGCACTGGGTGAGCAAACAGAAGTTACAAAATTTAGCCAGGAGGAGTATGAAAGGCTTCAAAATGAGAAGATCTTATGTAGAATTTGCTTCGAAGAGCAGATTAACGTGGTCCTCCTTCCTTGTAGGCATCACATTATTTGCAGCACCTGCTGCGAAAAATGTAAACGGTGCCCTGTCTGCCGTGGCACCATTGAAGAAAGGATGCCTGTATATGATGTGTAG 1410 0.4262 MLVRRRVMSWRRVAKALQALVAHALLFSFTLLLVLKLDHLLPDSWTWWKVFSPLWLFHAVVARGRFSLPAPSIPHDRRWAPFHSLVATPLLVAFELLLCIHLGSSYEMNLRIVFMPLVFFEMVVLFDNIRMCRALMPGDDENLTDEAVWETLPHFWISISMVFLIAATVFTLLKICGDVAALGWWDLFINYGIAQCFAFLVCTKWHNPTIHGGCHITEPCSSSNTIRYLDMSRGGLVTYADEDREQNGFCNLQDIGGHIMKIPFIGFQILLFMHLEGTPSSAKNLQHWVIFSPLFLLQGAGVLFAAYRLIEKIVLLLYSGDIPERYSSIASKSRECFGFFRHGSRLLGWWSIDEGSKEEEARLFFSGSSGYNTFTPDTVKKMPRADLVEEIWRLQAALGEQTEVTKFSQEEYERLQNEKILCRICFEEQINVVLLPCRHHIICSTCCEKCKRCPVCRGTIEERMPVYDV 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2221g00014 469 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 397 468 IPR013083 -
Vium2221g00014 469 Pfam Transmembrane Fragile-X-F protein 35 297 IPR019396 -
Vium2221g00014 469 SUPERFAMILY RING/U-box 413 464 - -
Vium2221g00014 469 Pfam Zinc finger, C3HC4 type (RING finger) 420 462 - -
Vium2221g00014 469 ProSiteProfiles Zinc finger RING-type profile. 422 457 IPR001841 -
Vium2221g00014 469 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 8 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2221g00014 Vium-Chr2221 218669 226710 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2221g00014 8 469 C3H Transcription Factor Family AT1G73950 62.553 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2221g00014 - - gmx:113000756 884.789