Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2221g00013 ATGATACAGGAAGATCAAGGGCAGTGTTCTTCTCAAGCGATCAATAACTACCACCAGGCTTATCAAGACCAGCTTCTCCTTCAGCAACAGATGCAGCAACAAAACAATGATATCTTTGGTGGAGGAGGAAGAGGAGGGCTCAACATGTACCCTGGTGAAGTCTCTCAAATCATGCATCAGCCTTGGTCTATTCCTCATAATCAGGTTCATCACCCCTTCAACACGGTGAGAGAGCACGACCCTTTTCTTGTCCCTCCCCAACCTTCACCCTATGCAACTTTGTTCAACCGAAGGGGTCATTCTCTTCAGTTTGCATATGATGGTTCATCTTCTGACCATCTTAGGATCATATCAGACACCCTTGGACCGGTCGTTCAACCCGGTTCGGCACCCTTTGGCCTCCAAACCGAGTTGGCTAAGATGACTGCTCAGGAAATCATGGAGGCCAAGGCCCTTGCAGCTTCCAAGAGTCACAGTGAAGCCGAAAGGAGGCGCAGAGAGAGAATCAACAACCATCTTGCCAAGCTTCGCAGCTTGTTGCCTAGCACAACCAAAACAGATAAAGCATCATTGCTGGCAGAAGTGATTCAGCATGTGAAGGAGCTGAAGCGTCAAACCTCATTGATAGCAGAATCGAGTCCGGTTCCTACGGAGGCTGATGAGTTAACTGTGGTGGACGAAGCTGATGAAGATGGGAGGTCTGTGATCAAAGCCTCTTTGTGCTGTGAAGATAGGTCAGATCTGTTTCCTGAACTCATCAGGACCTTGAAAGCATTGAGGCTAAGAACCCTTAAAGCTGAGATCACAACGCTGGGAGGACGTGTGAAGAACGTGTTGTTCATCACTGGGGAAGAAGAAGACTCGAGCAGCGGCAGCGAGGACCACAACCACCAACAGCAGTACTGCATTAGCTCAATACAAGAAGCACTTAAGGCGGTGATGGAGAAGAGCGTGGGGGATGAGTCTGCTTCAGCAAATATTAAGAGACAAAGGACCAATATAATATCAATGTCCTAG 1017 0.4828 MIQEDQGQCSSQAINNYHQAYQDQLLLQQQMQQQNNDIFGGGGRGGLNMYPGEVSQIMHQPWSIPHNQVHHPFNTVREHDPFLVPPQPSPYATLFNRRGHSLQFAYDGSSSDHLRIISDTLGPVVQPGSAPFGLQTELAKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAESSPVPTEADELTVVDEADEDGRSVIKASLCCEDRSDLFPELIRTLKALRLRTLKAEITTLGGRVKNVLFITGEEEDSSSGSEDHNHQQQYCISSIQEALKAVMEKSVGDESASANIKRQRTNIISMS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2221g00013 338 CDD bHLH_AtAIG1_like 148 224 - -
Vium2221g00013 338 PANTHER TRANSCRIPTION FACTOR BHLH30 34 334 IPR045847 GO:0003700|GO:0006355
Vium2221g00013 338 SMART finulus 159 208 IPR011598 GO:0046983
Vium2221g00013 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 209 IPR036638 GO:0046983
Vium2221g00013 338 CDD ACT_UUR-ACR-like 239 282 - -
Vium2221g00013 338 Gene3D - 148 209 IPR036638 GO:0046983
Vium2221g00013 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 202 IPR011598 GO:0046983
Vium2221g00013 338 FunFam transcription factor bHLH30 148 211 - -
Vium2221g00013 338 Pfam Helix-loop-helix DNA-binding domain 156 202 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2221g00013 Vium-Chr2221 204736 207162 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2221g00013 10 331 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 57.102 7.56e-104 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium2221g00013 HLH 1.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2221g00013 - - gmx:100799872 502.671