Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2221g00006 ATGAGAGACGATTGTGGCACATTCGAGTTCTTGGAGCAGGGCACTTGTCGCGATCTCGCCCTAAACCTTCTCCGCCATCGGTATCGCGGTCGCAATCGGCGTCTCCGTCCTCGGCGCCGCCTGGGGATCTACATCACCGGTAGTAGCTTGATCGGCGCTGCAATCAAGGCTCCTCGAATCACTTCCAAAAATCTCATTAGTGTAATCTTCTGTGAAGCTGTTGCTATATATGGTGTTATTGTGGCTATTATTCTTCAAACAAAATTAGAAAGCGTTCCAGCAGCAAATATCTATTACCCAGAGTCTCTTAGGGCTGGATATGCAATCTTTGCTTCTGGATTAATCGTGGGCTTCGCAAATCTTGTTTGTGGGTTGTGTGTAGGAATAATTGGAAGAAGCTGTGCATTATCTGATGCTCAGAATTCCTCCCTCTTCGTGAAAATTCTTGTGATTGAGATCTTTGGTAGCGCGCTTGGGCTATTTGGAGTGATTGTTGGAATTATTATGTCAGCACAAGCAACATGGCCAACCAAAGTTTAG 540 0.4593 MRDDCGTFEFLEQGTCRDLALNLLRHRYRGRNRRLRPRRRLGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPAANIYYPESLRAGYAIFASGLIVGFANLVCGLCVGIIGRSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPTKV 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2221g00006 179 FunFam V-type proton ATPase proteolipid subunit 39 176 - -
Vium2221g00006 179 CDD ATP-synt_Vo_c_ATP6F_rpt2 105 169 - -
Vium2221g00006 179 SUPERFAMILY F1F0 ATP synthase subunit C 41 88 IPR035921 -
Vium2221g00006 179 Gene3D - 39 176 IPR035921 -
Vium2221g00006 179 PRINTS Vacuolar ATP synthase 16kDa subunit signature 39 63 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vium2221g00006 179 PRINTS Vacuolar ATP synthase 16kDa subunit signature 65 89 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vium2221g00006 179 PRINTS Vacuolar ATP synthase 16kDa subunit signature 148 171 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vium2221g00006 179 PRINTS Vacuolar ATP synthase 16kDa subunit signature 121 147 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vium2221g00006 179 SUPERFAMILY F1F0 ATP synthase subunit C 102 170 IPR035921 -
Vium2221g00006 179 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 41 173 - -
Vium2221g00006 179 Pfam ATP synthase subunit C 110 169 IPR002379 GO:0015078|GO:0033177|GO:1902600
Vium2221g00006 179 Pfam ATP synthase subunit C 41 85 IPR002379 GO:0015078|GO:0033177|GO:1902600
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2221g00006 42 178 Primary Pumps ATPases(2) AT2G25610 92.701 2.91e-85 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2221g00006 K03661 - gmx:100527177 251.521