Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2221g00005 ATGATGCCCCCTGAGCAAGAAACCTCTATTTCAGCAAACATTCCACCCATATCAACCCGACCAGAGACCAGCTCGGTCCATCATGAACCAGAAGGTTCTGCTACTAACAAAATCAAACCAAGTTTGGAATTGGATGATAATGGCATTCCCTCGCACCATCAGACTCAGCCAACTCCACCACCACCACCAAGATTATCCGTTCTTCACCAATCCTTGCGCCCCATTACCCTCAAATTCGAAGACGTGTCATACACTATAACCTACGAGAGCCAGAAGAAGAAGGGTTGCGTTTTACGTAATGAGTCCAAGCTAAGAAGAAAGGTGCTGAGCGGCGTGACCGGAGTAGCGAATCCCGGCGAGTTAACGGCAATGTTGGGTCCCTCGGGGAGCGGCAAGACGACCCTCTTAACCGCCCTGGCGGGGAGGCTTGCGGGAAAAGTGTCCGGCACGATAACGTACAACGGACACAGCGACAGCTCCTTCGTGAAACGCAAGGTTGGGTTCGTTCCCCAAGACGACGTGCTCTACCCTCACCTCACAGTGTTGGAGACTCTCACTTACGCAGCTCTGTTGAGGCTACCCAAGAGTTTGAGCAGAGAAGAGAAGAAGGAGCACGCAGAGATGGTGATCGTGGAGCTTGGCCTCACACGATGCCGTAATAGCCCTGTAGGAGGATGCATGGCTCTGTTCCGGGGCATTTCGGGTGGGGAACGGAAACGGGTCAGTATTGGGCAGGAGATGTTGGTCAACCCGAGTTTGTTGTTCGTCGATGAGCCAACTTCGGGTTTGGACTCCACAACGGCCCAACTTATTGTGTCCGTGCTCCGCGGGCTCGCCCGGGCGGGTCGGACCGTAGTCACCACTATCCACCAGCCTTCCAGCCGGTTGTATAGGATGTTCGATAAGGTGGTGGTCTTGTCTGACGGGTACCCTATTTACAGCGGGCGTGCGGATCGGGTCATGGACTATCTCGGATCCATTGGGTATGTCCCGGCTTTCAATTTCATGAACCCGGCTGATTTCCTCCTTGACCTTGCCAATGGCATAGTTGCTGATGTCAAACATGATGATCAGATAGACCACCATGAGGATCAAGCTTCAGTCAAACAGTACCTAATTTCATCCTTTAAGAAGAACTTATACCCTGCTCTTAAGGAAGACATTCAACAAAATAGCAGAGACCCTCTGGCTTTTACATCAGGAACACCTAGACGCTCTGATAACCAATGGACTAGCAGCTGGTGGGAGCAATTCAGGGTGCTTCTTAAGAGAGGTTTACAAGAGAGGAGGCACGAATCTTTTTCTGGTTTAAGGATTTTCCAAGTCCTGTCTGTATCCATTCTCTCAGGACTTCTGTGGTGGCATTCTGATGCTGCACATGTACAAGATCAGGTGGGACTCCTTTTCTTCTTCTCCATCTTCTGGGGATTCTTCCCTCTCTTCAATGCCATCTTTGCATTTCCTCTGGAGAGGCCAATGCTAATAAAGGAAAGATCTTCAGGGATGTACCAACTCTCCTCGTACTACGTTGCCAGGATGGTGGGGGACTTGCCAATGGAGCTAGTGCTTCCTACCATATTTGTAACTATTTCCTATTGGATGGGTGGTCTCAAGCCTTCGTTGCTCACATTTGTGTTAACCCTCTTGATCATGCTTTTTAACGTGCTAGTGTCTCAAGGCATAGGCCTAGCACTTGGTGCCATCCTCATGGATGTGAAGCAGGCGACAACTCTCGCTTCAGTGACCATGCTGGTGTTTCTCTTGGCTGGTGGTTACTATATTCAGCAAATGCCTGCTTTTATAGCTTGGTTGAAGTACATTTCTTTCAGTCACTACTGCTATAAGCTTCTGGTAGCAGTTCAGTATCCAATAAATGAAGTATATGAGTGTGGACCAGGGTTACATTGTAGAGTGAGAGATTTCCCTGCAATAAAGTGTCTGGAGCTTGGTGATAACATGTGGGGTGAAGTGGCCGCATTGACTGTAATGTTAATTGGATACAGAATTGCAGCATATCTAGCCTTGAGGATGGGGCAGCCTCACTGA 2046 0.4936 MMPPEQETSISANIPPISTRPETSSVHHEPEGSATNKIKPSLELDDNGIPSHHQTQPTPPPPPRLSVLHQSLRPITLKFEDVSYTITYESQKKKGCVLRNESKLRRKVLSGVTGVANPGELTAMLGPSGSGKTTLLTALAGRLAGKVSGTITYNGHSDSSFVKRKVGFVPQDDVLYPHLTVLETLTYAALLRLPKSLSREEKKEHAEMVIVELGLTRCRNSPVGGCMALFRGISGGERKRVSIGQEMLVNPSLLFVDEPTSGLDSTTAQLIVSVLRGLARAGRTVVTTIHQPSSRLYRMFDKVVVLSDGYPIYSGRADRVMDYLGSIGYVPAFNFMNPADFLLDLANGIVADVKHDDQIDHHEDQASVKQYLISSFKKNLYPALKEDIQQNSRDPLAFTSGTPRRSDNQWTSSWWEQFRVLLKRGLQERRHESFSGLRIFQVLSVSILSGLLWWHSDAAHVQDQVGLLFFFSIFWGFFPLFNAIFAFPLERPMLIKERSSGMYQLSSYYVARMVGDLPMELVLPTIFVTISYWMGGLKPSLLTFVLTLLIMLFNVLVSQGIGLALGAILMDVKQATTLASVTMLVFLLAGGYYIQQMPAFIAWLKYISFSHYCYKLLVAVQYPINEVYECGPGLHCRVRDFPAIKCLELGDNMWGEVAALTVMLIGYRIAAYLALRMGQPH 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2221g00005 681 Pfam ABC-2 type transporter 290 354 IPR043926 GO:0140359
Vium2221g00005 681 SMART AAA_5 118 311 IPR003593 GO:0016887
Vium2221g00005 681 FunFam ABC transporter G family member 22 96 327 - -
Vium2221g00005 681 CDD ABCG_EPDR 74 315 - -
Vium2221g00005 681 Pfam ABC transporter 111 261 IPR003439 GO:0005524
Vium2221g00005 681 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 48 670 - -
Vium2221g00005 681 MobiDBLite consensus disorder prediction 1 31 - -
Vium2221g00005 681 Gene3D - 92 327 IPR027417 -
Vium2221g00005 681 Pfam ABC-2 type transporter 416 622 IPR013525 GO:0016020|GO:0140359
Vium2221g00005 681 ProSitePatterns ABC transporters family signature. 233 247 IPR017871 GO:0005524|GO:0016887
Vium2221g00005 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 327 IPR027417 -
Vium2221g00005 681 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 77 333 IPR003439 GO:0005524
Vium2221g00005 681 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2221g00005 Vium-Chr2221 47701 52055 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2221g00005 107 309 Calmodulin-binding Proteins AT2G36910 29.384 1.37e-11 66.2