Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium2216g00053 | ATGGATTGTACAGCTGCAAGAAGGACACAAAAGGCTGACCGAGAAAAGCTGAGGAGGGATCGACTCAATGAACAATTTATAGCGCTGGTCAACATTTTAGATCCTGATAGGCCCAAAAATGACAAAGCAACCGTTATAGATGATACCATTCAATTGCTACAGGACCTTACTTCTCAAGTTAGTAAACTTAAAGATGAATATGCTGCACTACATGAAGAATCTTGTGAGTTGGCTCGCGAGAAAAATGATCTTAGAGAAGAAAAGGCTTCTCTTAAATCAGATATTGAGAAGTTGAATTGTCAGTATCAGCAACAGCTCAGGACTGTGTCTCCATGGACTGCAATGGATCATTCAGTAATGGTAGTTCCACCATCATATCCATATCCAGTGCCAATGCCAATACCTCCTTCTCCAATTGCTATGCAGCCATACCCCTTCTATGCTAATCAACATTCTGCTATTATCCCTAACCCTTGTTCAACATATGTTCCTTATTTAGTCCCTAATACCCTTGTTGAACAGCAATCCATCCAGCACATAGCCCCACCTCTTCATCCAGGTTTCCAGTCCCACATGTCGGGTAAACAAGAGTCCAGAAACAAATGCAAGGAGAGCATGGTTGAGAAACGTGAGGATTCAAATGATGTCACTGCAAACCGGACTTCCGGGTTTTCTGCAGACCAGGATTTGTCATCTGGGCAAATAAAATCTAGCGAATTGTCAAGGAAGCAAAGCAGTTGCACTGAAGTGATTTCGTTAGATAGGTGCTCATCACCTAGGAGCATTCAGGAGAGTTCATCAAGTAGTGTAGTTCACGAGCACAAAGGATAA | 831 | 0.4236 | MDCTAARRTQKADREKLRRDRLNEQFIALVNILDPDRPKNDKATVIDDTIQLLQDLTSQVSKLKDEYAALHEESCELAREKNDLREEKASLKSDIEKLNCQYQQQLRTVSPWTAMDHSVMVVPPSYPYPVPMPIPPSPIAMQPYPFYANQHSAIIPNPCSTYVPYLVPNTLVEQQSIQHIAPPLHPGFQSHMSGKQESRNKCKESMVEKREDSNDVTANRTSGFSADQDLSSGQIKSSELSRKQSSCTEVISLDRCSSPRSIQESSSSSVVHEHKG | 276 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium2216g00053 | 276 | MobiDBLite | consensus disorder prediction | 196 | 216 | - | - | |
Vium2216g00053 | 276 | MobiDBLite | consensus disorder prediction | 182 | 276 | - | - | |
Vium2216g00053 | 276 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 5 | 74 | IPR036638 | GO:0046983 | |
Vium2216g00053 | 276 | PANTHER | TRANSCRIPTION FACTOR BHLH121 | 2 | 274 | IPR044579 | GO:0003700|GO:0006879 | |
Vium2216g00053 | 276 | CDD | bHLH_AtILR3_like | 11 | 85 | - | - | |
Vium2216g00053 | 276 | Gene3D | - | 4 | 81 | IPR036638 | GO:0046983 | |
Vium2216g00053 | 276 | Pfam | Helix-loop-helix DNA-binding domain | 7 | 56 | IPR011598 | GO:0046983 | |
Vium2216g00053 | 276 | Coils | Coil | 46 | 108 | - | - | |
Vium2216g00053 | 276 | SMART | finulus | 12 | 62 | IPR011598 | GO:0046983 | |
Vium2216g00053 | 276 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 6 | 56 | IPR011598 | GO:0046983 | |
Vium2216g00053 | 276 | MobiDBLite | consensus disorder prediction | 217 | 269 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium2216g00053 | Vium-Chr2216 | 334443 | 339662 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium2216g00053 | 1 | 229 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT3G19860 | 56.904 | 6.48e-76 | 232 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Vium2216g00053 | HLH | 1.9e-06 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium2216g00053 | - | - | gmx:100817000 | 397.127 |