Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2216g00053 ATGGATTGTACAGCTGCAAGAAGGACACAAAAGGCTGACCGAGAAAAGCTGAGGAGGGATCGACTCAATGAACAATTTATAGCGCTGGTCAACATTTTAGATCCTGATAGGCCCAAAAATGACAAAGCAACCGTTATAGATGATACCATTCAATTGCTACAGGACCTTACTTCTCAAGTTAGTAAACTTAAAGATGAATATGCTGCACTACATGAAGAATCTTGTGAGTTGGCTCGCGAGAAAAATGATCTTAGAGAAGAAAAGGCTTCTCTTAAATCAGATATTGAGAAGTTGAATTGTCAGTATCAGCAACAGCTCAGGACTGTGTCTCCATGGACTGCAATGGATCATTCAGTAATGGTAGTTCCACCATCATATCCATATCCAGTGCCAATGCCAATACCTCCTTCTCCAATTGCTATGCAGCCATACCCCTTCTATGCTAATCAACATTCTGCTATTATCCCTAACCCTTGTTCAACATATGTTCCTTATTTAGTCCCTAATACCCTTGTTGAACAGCAATCCATCCAGCACATAGCCCCACCTCTTCATCCAGGTTTCCAGTCCCACATGTCGGGTAAACAAGAGTCCAGAAACAAATGCAAGGAGAGCATGGTTGAGAAACGTGAGGATTCAAATGATGTCACTGCAAACCGGACTTCCGGGTTTTCTGCAGACCAGGATTTGTCATCTGGGCAAATAAAATCTAGCGAATTGTCAAGGAAGCAAAGCAGTTGCACTGAAGTGATTTCGTTAGATAGGTGCTCATCACCTAGGAGCATTCAGGAGAGTTCATCAAGTAGTGTAGTTCACGAGCACAAAGGATAA 831 0.4236 MDCTAARRTQKADREKLRRDRLNEQFIALVNILDPDRPKNDKATVIDDTIQLLQDLTSQVSKLKDEYAALHEESCELAREKNDLREEKASLKSDIEKLNCQYQQQLRTVSPWTAMDHSVMVVPPSYPYPVPMPIPPSPIAMQPYPFYANQHSAIIPNPCSTYVPYLVPNTLVEQQSIQHIAPPLHPGFQSHMSGKQESRNKCKESMVEKREDSNDVTANRTSGFSADQDLSSGQIKSSELSRKQSSCTEVISLDRCSSPRSIQESSSSSVVHEHKG 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2216g00053 276 MobiDBLite consensus disorder prediction 196 216 - -
Vium2216g00053 276 MobiDBLite consensus disorder prediction 182 276 - -
Vium2216g00053 276 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 74 IPR036638 GO:0046983
Vium2216g00053 276 PANTHER TRANSCRIPTION FACTOR BHLH121 2 274 IPR044579 GO:0003700|GO:0006879
Vium2216g00053 276 CDD bHLH_AtILR3_like 11 85 - -
Vium2216g00053 276 Gene3D - 4 81 IPR036638 GO:0046983
Vium2216g00053 276 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Vium2216g00053 276 Coils Coil 46 108 - -
Vium2216g00053 276 SMART finulus 12 62 IPR011598 GO:0046983
Vium2216g00053 276 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Vium2216g00053 276 MobiDBLite consensus disorder prediction 217 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2216g00053 Vium-Chr2216 334443 339662 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2216g00053 1 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 56.904 6.48e-76 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium2216g00053 HLH 1.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2216g00053 - - gmx:100817000 397.127