Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2216g00047 ATGTGGAAAGCGGCTTTAACAGAATTAACGGCAACTGCATCTCTGATGTTCACCTTGACCACTTCCATTGTTGCATGCTTGGACTCACATGAGACTGATCCTAAGCTTCTTGTTCCATTTGCAGTTTTCATCATAGCCTTTTTGTTCCTAGTTGTGACAGTTCCTCTCTCTGGGGGCCACATGAGTCCCGTTTTCACATTCATTGGTGCTTTGAAGGGTGTTGTCACTCTCACCCGTGCTCTCATTTACGTCTTAGCACAAATCATTGGCTCGATAATCGGTTTCTTTATACTAAAGTGCGTCATAGACCCTAAATTAGCCTACACATATTCCTTGGGAGGTTGTGCCATTGATGGGCAAGGAGTGAGTTTTGGGGTTAAGCCACAGAATGCTTTGCTAGTGGAATTCACATGCACATTTGTGGTACTCTTTGTGGGAGTCACATTGGCATTTGACAAGAAAAGGTCTAGGGAGTTGGGCTTGCCAATGGTGTGTTTGGTGGTGGCAGGATCCATGGCATTGGCAGTGTTTGTGTCCCTAACTGTATCTGGGCGGGCCGGTTATGCTGGTGTGGGCCTCAACCCAGCAAGATGCTTAGGCCCGGCATTGCTTCATGGAGGACCACTCTGGCATGGCCACTGGGTTTTCTGGCTTGGGCCTTTCTTGGCATGCATGGTGTATTATATTGTGTCTATGAACCTTCCAAAGGTGGATTTGATTTGGCTTGAGGGAGAACATGATGTTTATGATAATACTTCTTTCTCAAAGGATCTGCCAGAACAATGCAATGCAGGGTTCCAACTCCAAGTCTGA 813 0.4649 MWKAALTELTATASLMFTLTTSIVACLDSHETDPKLLVPFAVFIIAFLFLVVTVPLSGGHMSPVFTFIGALKGVVTLTRALIYVLAQIIGSIIGFFILKCVIDPKLAYTYSLGGCAIDGQGVSFGVKPQNALLVEFTCTFVVLFVGVTLAFDKKRSRELGLPMVCLVVAGSMALAVFVSLTVSGRAGYAGVGLNPARCLGPALLHGGPLWHGHWVFWLGPFLACMVYYIVSMNLPKVDLIWLEGEHDVYDNTSFSKDLPEQCNAGFQLQV 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2216g00047 270 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Vium2216g00047 270 PRINTS Major intrinsic protein family signature 175 197 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2216g00047 270 PRINTS Major intrinsic protein family signature 134 152 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2216g00047 270 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2216g00047 270 PRINTS Major intrinsic protein family signature 42 66 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2216g00047 270 PRINTS Major intrinsic protein family signature 3 22 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2216g00047 270 PRINTS Major intrinsic protein family signature 79 98 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2216g00047 270 PANTHER AQUAPORIN-LIKE 1 250 - -
Vium2216g00047 270 SUPERFAMILY Aquaporin-like 1 228 IPR023271 -
Vium2216g00047 270 Gene3D Glycerol uptake facilitator protein. 1 234 IPR023271 -
Vium2216g00047 270 Pfam Major intrinsic protein 2 225 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2216g00047 Vium-Chr2216 315179 316306 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2216g00047 3 238 Major Intrinsic Protein MIP AT2G36830 30.000 8.36e-22 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2216g00047 K09866 - gmx:100804160 448.743