Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2216g00046 ATGAACGACCAACTTTCAATGGCCGTTCATGGCGGTGACACAAAGTTTCACGACAAGTTTTCAGAGTCCAAATTTCTTACCTTTATCGGTGCCCATGAAATTTTCACAGTGGAGACGTGGAAAGCAGCTTTGGTAGAGTTAATTGCAACTGGTGCACTGATGTTCACCCTAACGAGTTGCACTGTTGCATGTTTGGAATCACACGAGTCCAATCCCAAGCTTCTTATTCCCTTTGCAGTGTTCATCATAGTGTTCTTGTTTTTAATTGTGATAGTTCCTCTATCCGGGGGTCATATGAACCCTATTTTCACATTCGTTGCGGCTCTAAAGGGTATTGTCACCCTTTCTCGTGCTCTCCTTTACGTCCTGGCACAGTGCATTGGCTCAATAATTGGATTCTTTGTACTCAAGAGTGTGATGGAGCCAAAATTAGCACACACTTATTCTTTGGGAGGTTGTGCGATTGGTGACAAAGGACAAGGTTCTTCCATAAACCTGCAGGATGTTTTGTTGTTGGAATTCTCTTGCACACTTCTGGTACTCTTTGTCGGTATCACGCTGGCATTTGATAAGAAAAGGAGCAAGGAATTGGGCTTTCCAATGGTGTGTTTCGTGGTAGCAGCATCCCTCGCACTCGCAGTTTTTCTGTCGTTAACTGTAACAAGGAGGCCTGGTTATGCAGGTGCGGGCCTCAACCCGGCAAGATGTTTGGGCTCGGCGTTACTTCACGGAGGCTCACTATGGAATGGGCATTGGATTTTCTGGGTCGGGCCTTTCTTGGCCTGCATAATCTATTACAGTGTCTCCATTAGCCTACCAAAGAAGGGTTTGAATTGGGTGGATGGAGAATACGATATCTTCAACTTGGCTATGGGTTTTTGTGGAACCATCCCTAACAATTCCGTTTTAAACGATCTTCCATGA 924 0.4513 MNDQLSMAVHGGDTKFHDKFSESKFLTFIGAHEIFTVETWKAALVELIATGALMFTLTSCTVACLESHESNPKLLIPFAVFIIVFLFLIVIVPLSGGHMNPIFTFVAALKGIVTLSRALLYVLAQCIGSIIGFFVLKSVMEPKLAHTYSLGGCAIGDKGQGSSINLQDVLLLEFSCTLLVLFVGITLAFDKKRSKELGFPMVCFVVAASLALAVFLSLTVTRRPGYAGAGLNPARCLGSALLHGGSLWNGHWIFWVGPFLACIIYYSVSISLPKKGLNWVDGEYDIFNLAMGFCGTIPNNSVLNDLP 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2216g00046 307 Gene3D Glycerol uptake facilitator protein. 27 275 IPR023271 -
Vium2216g00046 307 PANTHER AQUAPORIN-LIKE 17 291 - -
Vium2216g00046 307 Pfam Major intrinsic protein 35 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2216g00046 307 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2216g00046 307 PRINTS Major intrinsic protein family signature 213 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2216g00046 307 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2216g00046 307 PRINTS Major intrinsic protein family signature 252 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2216g00046 307 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2216g00046 307 SUPERFAMILY Aquaporin-like 37 264 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2216g00046 Vium-Chr2216 312804 314411 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2216g00046 5 264 Major Intrinsic Protein MIP AT2G37180 27.206 3.70e-21 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2216g00046 K09866 - gmx:100797262 470.314