Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2216g00034 ATGGAAGCTATTTTCGTCCCCAAACCAGCTTCTCATTCCCACTTCAAAACTAAATTCTCTTCAAACCCCAAACACTTCCTTAAACAACAACCATTTCTTCCCATCCGCCAAAACCCCACGCGCTTCCGCCTCGTCACCGCCGCACTCCAAAACCAACAACAAGCAGCTTCCAAAGACACCGAAGACGAGTCCTATGGTGAAGTCAAAGGCATCATCGGCAGCAGAGCCCTCGACGCCGCCGCCGGAATGGAGTACCTCATCGAGTGGAAAGACGGCCACGAGCCGTCTTGGGTTCCCGCAGACTTTATAGCCAAAGACGTCGTCGCCGAGTACGAAACCCCGTGGTGGACCGCCGCGAAGAAGGCCGATGAGCCCGCGCTGAGGAACCTCCTCGAATCCGGCGACGGCCGCGATGTCGATGCTGTGGACGCCGAAGGTCGTACCGCGCTCCTCTTCGTAGCGGGACTTGGCTCGGAACCTTGCGTGAAACTGCTGGCGGAAGCTGGCGCGAACCTGGACCACCGCGACCGCAGCGGCGGTCTCGCTGCGCTGCACATGGCGGCGGGGTACGTGAGGCCCGGTGTTGCGAAGGTGCTGCTGGATCTGGGCGCGGATCCTGAGGTGGCGGATGACCGTGGAAGAACGGCGTTGGATCTGGCGCGGGAGATTCTGAAGGCGACGCCGAAGGGGAATCCGTTGCAGTTCGGGCGCAGGATTGGGCTTGAGGGAGTGGTTAGGGTTTTGGAAGGGGCTGTGTTCGAGTACGCAGAGGTGGAGGAGATTCTTGAACGGAGAGGGAAAGGAGAGAATTTGGAGTACCTTGTGCGGTGGAAGGACGGTGGTGCGAATGAGTGGGTGAAGGCGAAGTTTGTGGCGGAGGATCTTGTAAGAGACTACGAGGCTGGCCTTGAATACGCCGTGGCCGAGGCGGTGCTCGCGAAAAGAATCGCTGATGAAGGGACGCCGGAGTTTTTAGTTAAATGGGCCGATTTAGAGGAGCCCACTTGGGAGCCCCAGGAGAATGTGGACCCTGACCTTGTCAAAACTTTTGAGGAAACAAACAACCAGGCCCAGCCCAGTAGTAATGGGTCTGCTGTCGTTGTTTCGCATCAAGATAGCCCGTAA 1125 0.5796 MEAIFVPKPASHSHFKTKFSSNPKHFLKQQPFLPIRQNPTRFRLVTAALQNQQQAASKDTEDESYGEVKGIIGSRALDAAAGMEYLIEWKDGHEPSWVPADFIAKDVVAEYETPWWTAAKKADEPALRNLLESGDGRDVDAVDAEGRTALLFVAGLGSEPCVKLLAEAGANLDHRDRSGGLAALHMAAGYVRPGVAKVLLDLGADPEVADDRGRTALDLAREILKATPKGNPLQFGRRIGLEGVVRVLEGAVFEYAEVEEILERRGKGENLEYLVRWKDGGANEWVKAKFVAEDLVRDYEAGLEYAVAEAVLAKRIADEGTPEFLVKWADLEEPTWEPQENVDPDLVKTFEETNNQAQPSSNGSAVVVSHQDSP 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2216g00034 374 ProSiteProfiles Ankyrin repeat region circular profile. 145 177 - -
Vium2216g00034 374 MobiDBLite consensus disorder prediction 352 374 - -
Vium2216g00034 374 SUPERFAMILY Chromo domain-like 62 115 IPR016197 -
Vium2216g00034 374 PANTHER MYOTROPHIN 44 247 - -
Vium2216g00034 374 ProSiteProfiles Chromo and chromo shadow domain profile. 256 285 IPR000953 -
Vium2216g00034 374 Pfam Ankyrin repeats (many copies) 165 220 IPR002110 GO:0005515
Vium2216g00034 374 ProSiteProfiles Ankyrin repeat profile. 179 211 IPR002110 GO:0005515
Vium2216g00034 374 Gene3D - 62 109 - -
Vium2216g00034 374 Gene3D - 252 301 - -
Vium2216g00034 374 ProSiteProfiles Ankyrin repeat region circular profile. 179 211 - -
Vium2216g00034 374 ProSiteProfiles Chromo and chromo shadow domain profile. 306 362 IPR000953 -
Vium2216g00034 374 SMART ANK_2a 110 141 IPR002110 GO:0005515
Vium2216g00034 374 SMART ANK_2a 179 208 IPR002110 GO:0005515
Vium2216g00034 374 SMART ANK_2a 145 174 IPR002110 GO:0005515
Vium2216g00034 374 SUPERFAMILY Chromo domain-like 304 353 IPR016197 -
Vium2216g00034 374 Gene3D - 302 354 - -
Vium2216g00034 374 Pfam Chromo (CHRromatin Organisation MOdifier) domain 308 352 IPR023780 -
Vium2216g00034 374 SMART chromo_7 254 304 IPR000953 -
Vium2216g00034 374 SMART chromo_7 64 116 IPR000953 -
Vium2216g00034 374 SMART chromo_7 305 355 IPR000953 -
Vium2216g00034 374 SUPERFAMILY Ankyrin repeat 99 222 IPR036770 -
Vium2216g00034 374 ProSiteProfiles Ankyrin repeat profile. 145 177 IPR002110 GO:0005515
Vium2216g00034 374 SUPERFAMILY Chromo domain-like 254 302 IPR016197 -
Vium2216g00034 374 CDD CD3_cpSRP43_like 303 351 IPR030300 -
Vium2216g00034 374 Gene3D - 110 251 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2216g00034 Vium-Chr2216 268960 270459 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2216g00034 127 220 CAMTA Transcription Factor Family AT5G09410 37.000 5.12e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2216g00034 K12271 - gmx:100818382 646.351