Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2216g00031 ATGATCAGTTCAAAGAAGATGATCCAAATGGCATGGAAGTGGCAGAAAGAGGTTACAAAGTACCAAAGGAAGAGACTTGTCTGGCCAAAGACTGAAGAAAATGCAGCAACGGCAGAAGGTTGCAGCGTGTGGACGAAGGCTGAAAAGGGTCACTTTGTCGTATACAGCATGGATAAGAAGCGCTTCGTGCTTCCATTACTGTATTTGAAAAACAACATTTTCAGAGAGCTTTTCAAGTTGGCAGAAGAAGAGTTTGGTCTTTCCAGCAACGTGCCTTTAACGTTGCCTTGCGAAGCCACGTTAATGGAGTACGTGATAACGTTGATACAGAGAAACGTAACGAAGGATCTGGAAGAAGCTGTCTTGATGTTCATAGCTACCGTTCGATGCCAATCGTCCTTTGATCTTCTTCCTGAACCAACCAACCAACGTTTGCTTTGCAGCTACTGA 450 0.4422 MISSKKMIQMAWKWQKEVTKYQRKRLVWPKTEENAATAEGCSVWTKAEKGHFVVYSMDKKRFVLPLLYLKNNIFRELFKLAEEEFGLSSNVPLTLPCEATLMEYVITLIQRNVTKDLEEAVLMFIATVRCQSSFDLLPEPTNQRLLCSY 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2216g00031 149 Pfam Auxin responsive protein 6 109 IPR003676 GO:0009733
Vium2216g00031 149 PANTHER AUXIN-RESPONSIVE FAMILY PROTEIN 1 132 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2216g00031 Vium-Chr2216 233016 233515 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2216g00031 49 118 Calmodulin-binding Proteins AT5G20810 38.028 1.62e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2216g00031 - - gmx:100803097 212.616