Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2216g00030 ATGATCAGTGCAAAGAGGCTTATTGAAATGGCAAGAAAGTGGCAGAAAATGGCTGCGGGAAAACGCAAGAGAATTTCATACCCCAGGCAGCAGAATCTTGATCGTGTTCATTCTTCAACACCAAACAAGGGTCACTTCGTGGTTTACAGCGTCGATCATAAGCGATTCGTGGTTCCCATAAAGTACCTCACCACCAGCGTGTTCAAAGAGCTTCTGAAATGGTCGGAAGAGGAGTTTGGTTTACCGTCTGATGGACCCATTACGTTACCTTGTGATAGCGTCTTCTTGGAGTACGTAATCTCGTTGATTCGGGAACATGTTTCCGAAGATGTTGAGAAGGCTTTGATCACAACAATGATTACGTGTCACCACTTGGCATCCTCATCGTCATCATCTTCTTCTCGTAGCAATGATCTTATGCAGAGCAACGGGCAGATGATTATTTATGGCTTTTGA 456 0.4452 MISAKRLIEMARKWQKMAAGKRKRISYPRQQNLDRVHSSTPNKGHFVVYSVDHKRFVVPIKYLTTSVFKELLKWSEEEFGLPSDGPITLPCDSVFLEYVISLIREHVSEDVEKALITTMITCHHLASSSSSSSSRSNDLMQSNGQMIIYGF 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2216g00030 151 Pfam Auxin responsive protein 12 103 IPR003676 GO:0009733
Vium2216g00030 151 PANTHER AUXIN-RESPONSIVE FAMILY PROTEIN 1 130 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2216g00030 Vium-Chr2216 230981 231671 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2216g00030 3 135 Calmodulin-binding Proteins AT4G34750 27.857 1.49e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2216g00030 - - ccaj:109798531 212.231